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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40452_c0_seq2
Scaffold_idBomo_Chr8
NCBI non-redundant
(nr)		PREDICTED:_loquacious_isoform_X6_[Bombyx_mori]
Ontology
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0019899 F enzyme binding
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0034599 P cellular response to oxidative stress
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0042473 P outer ear morphogenesis
GO:0042474 P middle ear morphogenesis
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048705 P skeletal system morphogenesis
GO:2001244 P positive regulation of intrinsic apoptotic signaling pathway
Transcript
Level		FPKM:8.91 TPM:7.04
ORF EntryO_BomoMG18272_5prime_partial:A_BomoMG_comp40452_c0_seq2
Sequence
(Nucleotide)
CTTCATACATATTATTAGCAGGTGTGACAAATGTTAAAAAGCCATGATATTATTATATTT
AGAGCTTAATTATAATTAATAACAATAAGTAAAACCAAGACTCACTAAAGAAAAAATAAA
ATAAACGTGGAACAATCATAGTCCTTACGGCCGGACAAAATATTAGTTTTTATTTAGTTG
GGTCTTGGTTGAACAGAACTCCAATCCTTTACTCGAGTAGTCTTTTCTAACTTGAACAGT
GCGATGTTTTATAAGGGCAGGTTGAACTCACACCATTCAATTTAAAAGAAACTTGGTGCG
TGCAGGTTCCTCGTCGGTGCCGGGATCACAAACATCGACGACGACACTGTACAGGTACAA
ATTGTTACAACCTCTATACTTTGCATTAAAATAATGCCCATTTTCACAGGCAAGGGATCC
TCTCTTTACAAACTCTTTACAGTGAGTGATGCATCTCACTCATACATTTAGTATTCTACT
TCCCTGCAAAGTTTTCCATCATGTACACAAAAGAAAACTCACAATCACTGGTATCAAACA
AAACGAACAACGACCTGTAATCCTTCAATACCATCAATGTTCCAACCCTTGCACTTTGTA
AAAAGTTCTTAAAGTTCAAGTGAATTAATTGCTACGTCGGAGCTTATTACAAAGCAAAGG
TCGGGCAGTTCGTCAACAAGACACTAGCTGAAACTATTTTCCGTTTAATGCTCAGCATAT
TAAAAAGGCTTACCAATGATAGTTAAAATTCATAGTTCCTAAACATGAATTTACGAAATA
AGTCAAACATACTGACTTCGCCGCAATAATAGTGTTAATTTATAGATAAAATAGATTAAA
AGCTAAGATTGAGATTATACTTTAATAATTAAATATGAATGCAAAAAACATGCCTAAGAT
GCTGAATATTAAACTGGAAATATATGTAAATCCACACTTTTTTTTGTATTTTCATATTAT
TTCATTTTTTTTACATTTTTATAACACGTAATTTCCACGCTGGGAAAATTACACTAATTC
TATGCAAAGTATAGCTTGTATTTTATGACAAATCACTCCATACTTTGTTTTTTAAGATTA
CGGGCTATGCAATTTATCCTCGCACATTGGCAGTAGTTTTATTAATAAATAATGAACTTT
TACTTGCAAATTATTAAAGGATTTAATTTCATCACAATGCTAGTTGCCAGAGTGACACTT
TTTTTACGGCCGTTTCGCTTAAAATCGCTTAAATGTTTATTGCTCTTGGTGGAAATAAAT
GTCTAGGGAATACATAATAAATTGACTGCTAAGAACGGTTTTTAAACTTCGGTTGATAAA
CCTCATATCGCAGCACTTTGTTAACACTTCAGTGAGGAGTTAATTATAGAATTGAATAGC
TATCGCGAAAATTATCTCTTGAAACGGGGGAACAATAACAGAGTTGAAAATAGTATCTCA
GTGAAGTATATAGGCTCCAGTAACTCCTTAACACAAGATTGGCCGTGAGCTCGTTCACTT
ATCTTAGCTATAAGTTTCAAACTGCCTACCATAAATTAACCAAAAAAAAAAAAAACAAGT
TGGTTACTGCAAACATGCCAGTTATAAAGCATAGCCCAAAGTACTATTGGTACATAGATG
CGTACTATTAATGCCATTATTCATATGGAAAGTGATGCAACAATATGAAGGCTCAAAACC
TAACGACATCAATACAAAACACATAGTGATATGGCCTGCATTAAAATTAAATCTCATAAC
GTTAGAGCCCATAGATCAAATGCATAGGTCGTCGCACTGGTCTTTGCTGATGTCGTAAGA
TGTTGAAAATTTCACTTTTTGGTCATAATCTTGAGATACTCCAAGGCGTTCTGAGCAGCA
GATGACTGGGCATCCTTGCTGGTGAGGCCGGCTCCGTGGCATACAGCTACTGGCAATGTG
GAAAGCTGGACAAGACACTGACATAGACCAGTCATAGACTTTTCTTCTATGTCGACATAG
GTCACCTCAAAAGATTGCTCTGATGCTATTTCTTGCAAGAACTGAACGAAGTTAAAATCC
TTATTGTTTAGTGGTGTCACCTGCAACTTGGCCAGGTTGGGGCCAACAGACTGTTTGAGA
TGTTTGTGGAACTGCGACACTTTATGGCTATGGCTCGTGGTCAATGTGGAGATTTTACTA
TCTTTCAAATCGGCATAACGGGCCGCAACACCGCCCTCATCATCATTCTGGAAGGATTCT
GGTGGGTTGTCCTGTAAGGCCTGCCACATCTTGTAGGCAGCTTGCCGTTTAGCTAATTTC
TTTGACTTGCCTGTACCAACTTCACGGCGCTTGAGCAATGTGCAAATGATCGTAAATTGA
CGTTCATGGGGCAAACCTGAAAGTCTA
(2367 bp)

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