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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40379_c0_seq1
Scaffold_idBomo_Chr16
NCBI non-redundant
(nr)		hypothetical_protein_KGM_15573_[Danaus_plexippus]
Ontology
GO:0000166 F nucleotide binding
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005691 C U6atac snRNP
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030624 F U6atac snRNA binding
GO:0042393 F histone binding
GO:0071001 C U4/U6 snRNP
GO:1903586 P positive regulation of histone deubiquitination
Transcript
Level		FPKM:5.93 TPM:4.68
ORF EntryO_BomoMG17838_3prime_partial:A_BomoMG_comp40379_c0_seq1
Sequence
(Nucleotide)
TCACATTCTGCCAATCGCCATTATTCGTTCGTTTGTGAATTTAACAAATACAAAACTACA
CAGTTATTGATTACTCTCGTGTGATAAACAATGGCGATAGTAGAAGACGAAATTCAGAAC
GGTTCTGAAGGGGAAAATGAAATTGAAGTTGTGGTTGAAGAAGATGATGGCGACCAGGAT
CCAGATTCTGATGATGAAATATTGGAGATGGGAGATTGGCAGAGGAAAGTGGCCGAATAT
GAACACAAAATCACATTACATCCTTTTAATTATGATGATCACATTGAATTGATCCAGACT
TTGTGGCGTCTATCGGAACTGGGGCAATGGCGAACGGCGTTTGAAAGATTATGGGAGATG
TCAGTTATAAAAGTTGATCATTGGCTCTTGTGGCTCCGAACAGAAGAGAATATTTCACAG
TCTGAAGAACTAATTGCCAATTTATTCTATAAGGCAACCTGTGATTGCTACTCTATGTCT
ATACTGTCAAGATGGAGTTCGTGGGCCCTTTCATTAGATGAAATACCTAAAATTCGAGCG
CAACTTGACGAAGTTTTGCGTCGTGGAGGCTCCGATCCGTATTCAGGAAAAGTGTTGTGG
GATCTAAAAATTGACTTTGAAAAATCACAATTAAATGAGACATGCAAAGAAGATTCGGGT
TATAAAGAACAAGAAGACCGTGTGTTGAGGTGTTTAGAGGTAGTGGCATCGCTTCCTATA
AGCAGAAATCAGGAGGCATGGGATCTATTTGAAGATTTTGCTAAAGATATCCGTGAACAG
GAGTACATAGAGAAGGTGGAACAGCAACATAAGGCAGCTGTGGATTACTTAAAGAAAATT
ATGCCATATGAAATCAGAACAAAGACCACTCAATGTTATATGGCCAATTACAAGGTATAC
CTTGAGTATATTGATCTTGTGAAGCAGTTGTCTGTAGAAGAGAAGTATGCTGAATGTGAT
AGCGACGGTCTGCTCAGGCTCCTGTACGACCGGGCGACGTACGAATGTCTGCTCAATCCG
GCCGTGTTCGAGTTGCTGGTCGAGTTCGCGAAGCACACCCAGGTGACGTCATCACGCGCG
ACGTACTGGCGCGTCCTCGAGCTGTGCACGCGGCGCTGTCCGCAGAAGCACACCTTTTGG
ACCCTCAAGATGCAGCAGGCTGAACACGAGGAGAAAGACTTCGACGAGGTGAAGTCGATC
TTCGAGACTGCCTTATCGAAAGGTCTGGAATCTTACAAGGAGGCTGAAATGCTATGGCTG
AACTATCTCGAGTACGTGCGCCGCAACACGAAGTTCAGTGACGACGATCAGATTGAGCGG
TTGAGGCGCACATTCAGGCTGGCCTGGGACTCGCTTGCTGAGGCATGGGGCGATGAAGCG
AATGATTGTGAGATACCATTGTATTGGGCAAGAATTGAATACAAATTCTTGAATTCACCA
AAACGAGGGAAAGAGATCTTTGAAGAATTATTCAAATATGGCTTCA
(1486 bp)

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