SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40358_c0_seq3
Scaffold_idBomo_Chr13
NCBI non-redundant
(nr)		PREDICTED:_THO_complex_subunit_2_isoform_X1_[Bombyx_mori]
Ontology
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0000902 P cell morphogenesis
GO:0001824 P blastocyst development
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010793 P regulation of mRNA export from nucleus
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0017145 P stem cell division
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048666 P neuron development
GO:0048699 P generation of neurons
GO:0051028 P mRNA transport
Transcript
Level		FPKM:3.83 TPM:3.02
ORF EntryO_BomoMG17740_5prime_partial:A_BomoMG_comp40358_c0_seq3
Sequence
(Nucleotide)
TGGAATAATTTACTTAAAACTATTAGATCGCCGTTTATTGTTACGATGGGATCCTACGCA
AAATTCGTATCTGATTACTGTAAAAACTGGGACAAATCTGGTCGAGAATTGTTCTTGAAA
CATTTGACGCAATTCACAAAAGATGAACATAGGACTCCACTATTTTCAAAGTCTGGGAAA
ATGTCTGGATTTTCTCAAAGTGTCTATGATTTTCTTCTTTGTGGCCTGAAAGGAAACCTT
AAAAAAGATACCGTTTTATCCTTCTTAAGAGAAATAACTAATTTGCATGCAGATGTGCCA
TCAATAATATTGGATATCATATCAATTTTGGATGCTGAAACCAGCCTAGATGTACAAAGC
GATGAGCGGGCTTATTTCTGCTACATTGTGAGAGAGCTGGAGCCATTTATTTCTGATAAG
TTACTAAAAGAAAGATTAGAGATAGATACATTACAAGATGCTGGTACTCTTAAGAACAAA
AACTTCTACACCAAATTCATAAAGATCAAGACTAAATTATACTACAAACAACGTAAATTT
AACTTATTTCGAGAAGAAAGTGAAGGATACTCAAAGTTAATAGTTGAATTAAACCAAGAA
ATAAATGAAGATACAGAATGGAAAAATTTGCTTGAAATAATTCAATCTCTTATTGGTTGT
TTTAATTTGGATCCAAACAGGGTACTTGACATAATTCTAGAATCGTTTGAAGCCCGACCA
CAATTAGATGCTCTTTTTATACCGCTTATTAAGAGTTACATGGCAGATCCTCATGTAATT
TCTGAGGTTTTAGGTTTCAAACTGAGTAATATGGAAATTCTTGATAACTATACAGAACCT
CCACCGTTGATGACTGTAATTGCATTGCTTTTACAACATCAGGTTATATCATTAGATGAC
ATCTATCCATGGCTTCGCCCAGATGATGTGATAATAGCTAAACAAGCTGATAAAGAAATA
AAAGCAGTTCAAGAATATATAAGAAAAATTAACATTGTGTCTACCAAAGGACCACAAACA
AATGCCCCCACTGAATTTATAGAAGATAAAGCTGATCCGCAGGAATATTGGAGCAATCAA
AAGCTAGTGTTATGTGAAACTTTATTGAGAGTCAATGCGTGGCGAGAGTTTGCCTCACTG
TTTGCGCGTCTTCCCACTACTACGATGCCGCCAAGACCAGCAATAGCCCTTTGTGGGTTG
CTGCATGCTGTTGTAGAACCATTGTATCGAAAGCAATGCCGAGTAGCTTCAAAAATACTC
GGAAAACCAGTACCTCCACTTAAATCAAATTTAGCACCACCTAATTGTAAAACATTCGAA
GACATGAAAGAAACAGTTATACCAGCCCTTATATTGCTTGGTCCAGCCCTTCATCATGAC
CCTGTCTTGATGTACAAAGTCATTAGAATACTTAGAACTGCTCGCGGTCAAAAAGATGAT
CCGTTACATTTTGAGGCACTAACCGTTTTGGATACCGCAATATTACCGGCTCTTACACTG
ATGGAAGGGAATTGTTGTATGGCTGAAGAGGTGTACACATTACTTAAGTTATATCCATAT
CAGTGCAGATACTGTCTCTATGCGCGTTGGAAAAATGAGGCTGGCGAACGAATACCTGCT
CTCATTCGTGTCCGGGGGAACTCATTGCAGAAAATAAAACACATAATGAAACGAGTATCC
AAAGAGAATATCAAGCCCCAAGGTCGTCTCATCGGGAAACTGTCGCACGCCGCCCCGGCC
TTTCTGTTTGATTACGTGCTCTTGCAGATACAAACATACGACAATCTGATAGGACCAGTA
GTAGAATCCATGAAATATTTGACGTCTCTATCTTTAGATGTTCTGGGATACTGTTTAGTT
GAGGCTTTAGGCTCTCGACGTTCGACGCCACCTGCGTGGCTACAAGCACTAGCCTCGTTC
GCCGGGGCAGCCTTCAAGAAACACAATATTGAGTTAACTGCTCTTTTGCAGTTTGTTGCT
AATCGACTCAAAGCTCAACAGAGTCAAGACCTGATAGTATTAAAAGAAATAGTACAAAAA
ATGGCCGGTATAGAAGCTGCTGAGGAAATGACACCCGAGCAGTTAGAGGCTATGGCAGGA
GGTGAACTACTTAAAGGAGAGGCTGGTTACTTTTCACAAGTGCGTAACACGAGACGCTCT
TCTGCGCGACTGAAAGATGCCATAGTCGGAAACAACTTAGACATATCTCTTTGTATATTG
GCGGCGCAACAGAGACATTGTTGTGTTTGGAAAGAATACGAAGATGACATTCAAATAAGT
GGCGAACCTCCAGGGTCCCAGCTAAAGGTGGTGGGTAGATTGGCAGACCAATGTCAGGAT
GCTCTGGTTCAGCTTGGTACATTCTTAGCATCGTCACATGCTCCCGATGAATATGCGGCG
AGGCTGCCATCGTTACAGGAACTGCTGCGTGATTACCATGTAGATGCAGATGTCGCATTC
TTTTTGCATCGTCCAGTTATAAACCAAAAGATATCCGCCAAGTTGGAATCTTTACGTAAA
GCATCGGACAGCAAATCGGATTCAATAGAGAAGATTATAGAAAGATACAATGTGGCATCA
AAGGAAGCCTTGGAGCCTATTGTATCGTCGATACAACCGATGCTGCCTGCGAGGGTTTTA
GAAGACATTTCGCCTGAGTTTTACGTTACATTCTGGTCATTATCCATGTACGATCTTCGA
GTGCCGGTCGAAAGTTACGAGAGGGAAATAGAACGCTTAAAAACAGCAGCAGCTAACGTC
AGCAAGGATTCGTCTCAAGGAACCAAAGTTAAGAAAGAACAGGAACGTTTCAATACGCTC
ATCGAAAAACTACAGGAGGAGCGGCGCCGACAGGCCGCGCACGTGGCGGCGGTGCGGGCG
CGGCTGGCGCGCGAGTGCGAGGACTGGTTCCCGGCGCGGGCGGTCCGCTCCGCCAAGAAC
GAGACCGTGACGCGGCTCATGCAGCTGTGCATATTCCCGCGCTGCGTGTTCACGGCGGCC
GATGCCCTCTACTGCGCCGAGTTCGTGCATACCGTGCACTCTCTGAAGACTCCCAATTTC
TCCACTCTTCTGTGTTATGATAGATTGTTTTGCGACATCACGTATTCGGTGATGTCTTGC
ACGGAGGCGGAGGCGGCGCGGTACGGCACGTTCCTCTGCAAGGTGCTGACGACCGCCATG
CGCTGGCACGCCGACAAGGACGCCTTCCACCGAGAGTGCGCGCACTACCCCGGCTTCGTC
ACCAAGTACCGCGTCTCCAAGCAGTTCACTGAAGCTAATGATCATGTCGGATATGAAAAC
TACAGGCACGTGTGCCACAAATGGCATTATAAAATAACCAAAGCAATGGTTGTTTGCTTG
GATTCAGGCGACTACGTGCAAATACGTAACGCCCTCATAGTTCTAATAAGAGTCTTACCT
CATTTTCCTGTTCTGGCTAAGCTAAGTCAAATTATCGAAAAGAAAATTGATAAGGTTAAG
GAACAAGAGAAAATACAAAGACAAGATCTTTATGTGTTAGCAACGGTCTACAGTGGACAG
CTACGGAACAAGTCCTCGAATATGATGAATGAAGCTGATTTCCATCAGATGAGCGACAAG
CACAAAGCGGCGAGCACCGCGGCCGCCAGCGCTGCGCCCGCCAAAGAAGAAGTGGTCGCA
GATCCTGAACCCGCCCCTGCACCCGCGCCCCCACCACAAGAAAGTGAAAAACGGGACTCG
CGCAATAGCGACCGCCGCCGAGACGAAGCGGACCGAGATAAAGATTCCAAAAGAGAATCA
AAAACCTCCACAAAGGAAAGGTCTAAAGAAGAAACCCGAATTAAAGATAGATCACCCAAA
GAACGTTTACAGAGGGAAAGCAATTATTTAGAAGCAATCTCACCGCCACACGAACATCGC
AGCACTTCAGATGATGTCGAACGAGATATAAAGCGACGTAAAGTTGAAAACAGCAGTAAC
GGCAAGGCTAGCAAAGAATTAGAAGAGCGATCTCCTGAAAAGGAAAAAAGGAAGACTAAA
GTTAGAGGTGATGAACGCAAAGAGCGTAAGATGAACCGCAAGAGGGACAGAGCTGAGGAA
TCTACAATTTTAGAACAAAAGAGACGCCGAGACGAACAAAAAGGAGCAATCAAGATGAGC
GGTCATCAGAATGGTTCTCAAGAAGATCACCATTACGACAAATACAAAAGGGAGAAATCA
CCATTCCGTGACCGTTCCCACGAAGAAGCCAGAGATAAACATAGGCGCACTAATGAATCC
AAGATAAGAAGATAGAAGCTGCCTGCCATGATATGCAATCGTTGGACAATTGGAGAAAAG
CCAACCTTCGCTGACAATATTGAATTATCTAAAGACATAATTGTATAAAATTAAGCGATG
AAATAAATATTTTTATCAAAAAAAA
(4405 bp)

- SilkBase 1999-2023 -