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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40353_c0_seq1
Scaffold_idBomo_Chr21
NCBI non-redundant
(nr)		PREDICTED:_regulator_of_nonsense_transcripts_1-like_[Plutella_xylostella]
Ontology
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0016246 P RNA interference
GO:0016787 F hydrolase activity
GO:0035145 C exon-exon junction complex
GO:0035195 P gene silencing by miRNA
GO:0046872 F metal ion binding
GO:0071456 P cellular response to hypoxia
GO:2000624 P positive regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Transcript
Level		FPKM:9.13 TPM:7.22
ORF EntryO_BomoMG17720_complete:A_BomoMG_comp40353_c0_seq1
Sequence
(Nucleotide)
TTTTTTTTTACAAATTCTTGAATTTTTATTGCATTTCCTTCACAAAAACACATAACAAAA
ATCTTTCATTAAACAATGACAGATGATAAACAAATATTCACGAAACACTGAGGGTGTTAA
CAAAATTCTGTATCACAAAAGTAAATCGAGTGAAATTGAATGAAGGACATAAAATTTATA
TGAATTCATTTTAAAAGACAGATTTAAACATATTTCAGTTAACATTCGACGTCTTTATTT
AGATTTTAGTGTACTTTTAAACAATTATACATAAAAAACTAATATATAACACAAGCTATC
TAAGGTGAAGTATCCTTTTTGTGAGAGGTGATGATAGATGGAGGATGTTTGAAGATTTTG
TAACAATTCATTATAAAATCTAGTTTAAAGTAAGAGTCACTAATACCAATATACGGATGA
CCAGAAACTAACAACAGAAGCAGTTGGAATTATGTATTTGTCTTGTTTTATGTTCTTTGT
GATTAAAAAGAAATTCTTATGTTTAGTGAAATTATGCACAAAATTATTGCTTGTCATATG
TATTAATTTTTATATTTTTGTTTTGTGACAACGACAGATGCACGAGTACATTTTATATGA
TTTTTGTAGAAGGAAAAACAATTACAAGTGAACATGATTTTTTCAGACGAAATTTAGTTT
TGAAATAAATGTCAACGATCTATGAAGAACTTTTCACGAATGATAATGATTGTGGAAAAA
TAATAACCGGAATCTAACACCGTTTACTAACTTGATTATGAAATTTTAGATTTCCTTGAA
TTTCTATTTGTGAAATGGTATCGATAATGTATTCGGTGATGAAAGCATCGAGTTCACAAT
TGACCAAAATCAAGTGAGACTCGATTTATGAGATGCAATTTGGTCGACTAAGAAAATTCG
TTTTTGCTTCCTCGTTTTTTTTTTGCTCGCATGCTGCTTTTATTATTTTTGTTGCTTATG
TAATTTACATAAAATACTAAAAGTTTTTTTTTTATATAACGAAATGTTACTTTGCTGATT
GAAATAATTAAAGAATTTCGATAATACATTTTGTCGATTTAGATGATGAAACGGGTAAAT
GTCGATTTCTATTTTCTAGGCGTACAAGATAAATCATTAAAGATTTCCTTACGCCACAGG
TCAAGGGGATAGACACGGCAGCAGTCGGGTTTTCCGTTTATTTCTGTAGTCGGACCTCCA
ATGAATTTCTATCCCTGTATGCGGTAACATTTAGCCCGCGCGTGGACCGCGAGGGCTCGT
TTCGCGCTGACACATTTTCCAAGGTCTGAGTTTCCACTCGCGAACACGGTCGACGGGCGA
AGACTAACGTTCCGGTCGGGGCGGGTCGTCTCGTCAGCGCCGCGGCCGCGTTCTCCGCTC
TCAGTACTGACTGCAGCGTGCTCTGAACCCGCCCTGGTACGTAGAGTCCTGCGACAGCAG
CCCGTCCGGTTGCGACGGACACTCCGGCGCCGTGGACTCCTGACTGAAGTCCGGTTGCGA
TGCGCCCTGCGACAGTGAGAGCGGCGGCTGCTGCGACAGGGGCTCCTGCGAGAAGCGCGG
CGGGACGCGACGGCGCGGCATGCGCGGCGGCAGGCGTTGAGTTGGAAAGGCGGCTGGCGG
CACCGGCGCATGTAGCAGGGCGCCGCGCTCCGGCCCCACGTACGCCAGCGGGTCTCGCGG
AGGCCGCGCTCGGTCATAGATGGAGCCCGGCACCATGGCTTCACGCGCGTCGAACATCGA
GGTGGACATGAAATGGGAGCCAGGATTCTGAGAGTTCACCAGCTTCTTCGGTTTTGCGAA
CTGAATGGCGGATTCTTTCAGATTCGAAAGCGGTCCTTCGGTAAGTACACGGCGCTCTTT
GTAGAAAGCGAGCAAGTGATTCCAGAGCGGCTGTTTACTGAGCACTTTCGGATTGCCGAC
GACGATGAGGCCGTATTTGGCGCGCGTGAGAGCGACGTTAAGACGTCGCGGATCGCTCAA
GAAGCCAATTCCTTGGTGTTCGTTGGACCGCACGCAAGACATAATTATGATGTCTTTTTC
CCTCCCTTGGAAGGCATCGACGCTGGCAACCTCGATTTCTTGGTACAGTTTAGCATGTAG
ACTGCCCTGGTACTGCATGTGCTGCACAAGATAGGATCGTTGTCCCTCATAAGGTGTTAT
TATACCGATCTGCTCGGGACGGACGCCTGCTTTTAAGAACCGAGTTGTGAGTTTTTCAAC
ATTCGCAGCTTCAGTTCTGTTTAAGTACGAAGTTCCGGAGCCGGCGATCTCTTCCTGTCC
CTGAGTGACGTAAAAGAACATGGGCCTGTCAGGTCTGGGCCACGGAAAATCGATTTTGTG
TAAACGCCTTTCTTCGGCGCTGACTCCATTCTGCAAGGACCCTTCGTAAAAGAAGTCTGA
AGGAAAACGTGAAAGTTCAGGATGCATGCGGTACTGTACTTCGAGTCGGAACGGACGGAT
TCCGAGAACGACCAAACGTTCAAAAAGACTCTGGCTGAGACCGGCTTTTGCAGCTTTCTT
ACACATTACCACGGGACCGAGTTGACAGTGATCACCGACTAGAATCAACTGTCTGGCTCC
TAGAACTACAGGCACCATACATTCTGGCTCGGTCGACTGCATGCCTTCATCGATCAAAAT
GGACTGGAATCTCATACGAGCAACGCGAGGGTCCCCGGCGCCTACGCAAGTGGTGCATAT
GACATCCGCAGCGTCGAGTAAGCGTCTCTCAGCGGCGCGGCGCAACGAACGATATCGCCT
TTCATCGGCGGCAGAAAGTTCACCGGCTTCTTCCTTGAGTCTAGTAAGTTTCCGAAGTTC
GCTATCAGCAGAACCGAGAGCGCGAGCTTGTTCATGAAGTGCCAAGAACGATACGGAAGA
CTCCATTGCCTCTCGCGACTTGGCACACAATCGGACCACCTTGAGTCCAGTCCGGTGTAT
CTTTTCAGTTAGTTGATCGACGGCGGTGTTCGAAGGTGCACAAACTAATACTGGTCCACC
GTTTTGCCGGACGAGCTGATACACTATAGTAGCGGATGTAACAGTCTTACCGGTTCCCGG
AGGACCTTGGATCAGAGACAGGGGACGCTGAAGAGCATGCTTAACTGCGTACACCTGAGA
TCTGTTAAGGTCTGGCAAATTAGGAGCACTGAAATGCTTTGGTAGATGTACTCGAAACAG
CACTTCCTCAACTTCGTGGCCTAACAGACGCCGATATATATAACCAGACACTGAAGAATC
ATCTAAGGCGAATTTACGTAGTGCCAGTTGCATTCTGTCGAAAGAAGTGCTCTTCCAGAT
GAAATCAACAACAAAATTAGAAGTGCAATCTAGAGGGGCCCCAGCACCGCTCTTCAGTTC
GAGTCCAACATCGTCACCATAGTTATCTGGGACCTTTATGACATGACCGACACCTGACCA
TGCTTTATGCATCTCACCAACATATCTCAATCTCAATTCATCGCCGTGCATTAACTTCAT
ATCGCTATCAGTTTTAGCCAATGTGAAGTAGGCAATAGTCTTTTTGTTCAGACCAACATC
CCAACGAACTTCAATACCCTCTTGAGTTTGCGACTCTTTCAGTCTCTTGTCATAGTCTGC
TTCCAGCTTTACAAGAGGACCAAATATGTTTTGGTATTGGTACCCATCTTCATACCTCAG
CAAAACCTGATGTGGTTCCTCATCTACTCCTGGTTTTTCTAAATCTTGGAAAGTAGCATC
CACATTGTCACGCCATAACTCTTCTAAGCGGCCTATTTGCTGTGGAGTTACTTGTCTAGC
TCGCATTTGTTCTGTTTCTGATGGCACTTTCACCAACCAAGACAGGAAGGCACGATCAGA
TATCAGAGGTTTCCACTGTTCCTGATCCCAGTTCATATCCTTCAAAGAGCTTTGAGCTGC
ACAAGGTTGTCGGCAAAGTAGCACAACAACAGAATCAGCTTTAGCTGGTATAAAGCCGAG
TACGAATACATTCCGAGCACCACATGAGTAACATTCCAGAAGGGTTTCGCCAAGTGGCCC
GTCACGGTGCAATGCAGCTTCCTTGTGCTTTGCACGTACTAAATGGTTGATGATATGAGA
GCCTGAAGTGTTACCGCGGCCATTACAGAACCACTTGTTGCATATGTTACACATAACGAC
TGTGGCCGGGTCGTGTATGCCACAGTATTTACAAGCATGATCTGGAAGTTCCTTGTTGCT
GTACAAAGCCTCATCTTCCTCTTCGAATTGCAGCTCCGGTATCGTATTAGTCACGTTAGA
GATTTTAGACGACAATTCTATACGTCCTATTCCGTTAACCTGGTTGGATGAAGACAACCC
ATGGTCATGTTGTGAAGCCTGTGTCTGGCTCTGAGAGGGTAATGTAAAATCCGTGAACTC
AAACTCAGAGCCTTGAGTGTCTGCTCCAATAAAGTCCCCTTCCTCTGTTTCCAGAAACGT
GAGCGATTGCGAGCTTGGGTCGAATGCTTCAACACTCATTTTTAATGACGAATTTAAACA
AACAAAATTAATCCAAAAGAAAATATATAGAACGACTATTGGCTGATATTTCCATAGCAG
TCACGCAGTTATTCAAACGACACACAAAT
(4589 bp)

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