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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40161_c0_seq1
Scaffold_idBomo_Scaf018
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:3.62 TPM:2.86
ORF EntryO_BomoMG16451_internal:A_BomoMG_comp40161_c0_seq1
Sequence
(Nucleotide)
TCAGGAAGAAAAGAAAACACAGGCCAAAGATGATGATGATTATTATCGTCATTATCACAG
ACGCGATAGAAGGAACAATGACTACAGAAGGAATCAGGATAGAGATAGGAGGCGAGATAG
GGATGGGGACAGTAGAGATAAGGATAGAAATAGAAGTGACAGAGATAGAAGAGATCGTGA
TAGTGAAAGGAGTAGTTCAAGAAGAAGTTATTACAATCCTAAATTTAAAGATGAACCCAA
AACCCCAAGTATTAGTGTTCTAAAGCCAACAGAAAAGACTGCCTGGGATGATGATGATGA
TGACCCAAGGTCTACAGTACGCAAATCCAGCTGGGACTTTCCAACACCTCTGCCTAGGGA
CTATGATCAGCGTAGCGAAAGAGGCAATAGAACAATGCGGGATTATAAAGGCAGACCGTA
TGAGAACACTCCTAGGGCCACCCCGCATAAGTTTGCGAGCTCTCGAAGATTAGTAGATGT
AGATGATCCTGATTGGCAAGAAGCAGAAAAGAAATTAGATAGAGATTGGTACAACATGGG
AGAAGGTGAAGCCGATGAATCGGATCCGTTCGGCAACACGAGCGCGGAGTACATGGCGCG
CAAGGAGGAACAAATAGAGAAACGTCGCAACAGGAAGGTGTCCGCTCAGAGACAGCAAAT
AGACAAGGACAACGACCTCTGGGAACGGAACAGGATGCTGACGAGCGGGGTTGTCCACGC
CATCAACGTCAACAACGATATGGATGAGGAGAGCGTTGACCGCGTCCACCTGCTGGTGCA
CAACATCGTGCCTCCATTCCTCGACGGAAGAATCATATTCACGAAGCAGCCGGAGCCCGT
GATACCGGTAAAAGATCCTACGTCGGATATGGCGGTAAACGCACGAAAAGGCTCGGCCTT
AGTGAAAGCATTCCGAGAACAAAAGGAGAGACGGAAAGCTCAGAAGAAACATTGGAAATT
AGAGGGAACCAAACTAGGCAACATCATGGGAATACAGAGGGAAAAAGAAGAACTCGAAGA
TGGCCCTACAAGAGAAGCGTACAAATACGCGGAGCATTTAGATAAAGAAGCTCAGGAACC
GGAATCGAAGTCGGACTTCGTGAAGAAGATGTCCATATCGGAACAGAGGCGCTACCTGCC
CGTGTTCGCCGTCCGCGAGGAGCTGCTGCAGGTCATCCGGGAGAACAACGTCGTCATCAT
AGTTGGCGAGACTGGCAGCGGCAAGACCACGCAGCTCACCCAGTACCTGCACGAGGAGGG
GTTCAGCCGGCTCGGCATGATCGGGTGCACGCAGCCGCGCCGCGTCGCCGCCATGTCCGT
CGCCAAGCGGGTCTCCGACGAGATGCACACGCGCCTCGGTGACGAGGTCGGGTACGCCAT
ACGGTTCGAAGACTGCACATCCCCGAGCACGGTCATCAAGTACATGACGGACGGCATCCT
GCTCCGCGAGGGGCTCCGGGAGCCGGACCTGGACAACTACTCCGCCATCATCATGGACGA
GGCTCACGAGCGCTCACTGTCCACCGACATGCTCTTCGGGCTGCTGCGGGAGGTGGTAGC
TCGTCGCTCCGACCTGAAGTTGATCGTCACGTCAGCCACGATGGATTCGACTAAGTTTTC
GACGTTTTTCGGTAACGTGCCGACTTTCACCATCCCCGGCAGGACCTTCCCCGTGGAGAC
GTTCTTCTCGAAGAACCCGTGCGAGGATTACGTTGACGGAGCTGTCAAACAGGCTTTACA
AATTCATCTGCAGCCAGACGAGGGCGACATTCTGATATTCATGCCT
(1786 bp)

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