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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp40119_c0_seq2
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		hypothetical_protein_TcasGA2_TC034535_[Tribolium_castaneum]
Ontology
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:28.82 TPM:22.77
ORF EntryO_BomoMG16257_complete:A_BomoMG_comp40119_c0_seq2
Sequence
(Nucleotide)
TGAGTAACGGCGGCATACCATACCTGAAAAATGCCGCCGCGAAAAATACGCCAACAGACG
GATGACAATAGTGATTCTGGTGATGAAAAGGTGGACGCAGTGCCCTCGCCAGCACCAGTG
CTCATGTCCGGGGATCAGCTGTCCTCGCTCCTGGCCGCCTTCTCAAAGTCGCAGGCCGAG
GCGAACCGACAACTCGTCGAGTCCCTGTGGGCATCGCATGGTTTGGGAAGTGGATCGAAG
TTCACCACCCCGATAGTGTCACCGTCCCCGACGCCAACAAGTAACATGGCTAAATGCACC
GCGCGTTTTGATGGCGTCGCTCGCGATCCGGAGGCCGTTGAAGCGTTTATCGACTCTGTG
GAGGTGTACAAGGAGTGTGCGTGCGTCTCCGACGATATCGCATTGCGTGGACTACCAATG
CTCATGGAAGGCGAAGCAGCCATATGGTGGAGAGGGGTCCGGAACGAAGTGTCCTCGTGG
CCCGACGCTCTCAAAAGGTTACGAGCTATGTATGGTGTGCCACGCCCTGCACATAAAGTT
TTTCGTGACGTGTTTTCGTCTGAGCAAGGTGATGAGCTTGCTGACAGTTTCATAGTGAGG
ATACGTGCTATGCTGTCCAGATTGCCGTACCAGCTACCAGAGGAAGCCAGGTTAGACATA
ATCTACGGTCTACTTCATAAACGGATAAGGAAAAGACTACCGAGAGATGGTGTGAGCGAC
ATAGAAACACTCATAGAGAAGTCGCGCATGGTGGAGGAGTCACTTGTGGAGTGCGCGGCT
GCCCTCAACATTCCGCCGCAGCCACACAAGTCGTTACCTACGGTGTTCGGCGAACGCAGC
TCCGCGCCTGACGTGACAAGTGTGAGATCGCCGAGACCTGCCGGCGCTGCCGCTGCGCTA
GTGCGCTCCTCCGTTGCTGTTGCACCGTCGTCGCTACCTCAACCGTCCCCATCCCCGCGT
AGTGTGAAAAGCGAAACATTGGTTAAAAAGCTATTTTGTGTGTATTGCAAATCGCGTGGA
CATGTCCGTGATTCTTGTAACAAAATTAGTGAAAACAAATCTGTATCTTGTTATGGTTGT
GGTGAAAAAGGTTTTATTAAAAGTAACTGTCCAAAATGTAACAATATTCCTAGCAATATT
CAGAGTAATGTTAATAATAGAAACTCGCACGTTAAGGACAATGTATTCTATTCTGTAAAT
GTAAACACTTTCTCAGATTCACATTGTAATGATAAACATTCTGTAAGTCGACCTATATTG
CATATAGGTATACAGGGTTATAATGGGACTGCTTTGTTAGATAGCGCCGCACGGCGTAGT
ATCGCGGGTTACACACTCTACGCGCTTTTTCAACGTTTAGGTATGAAGTTTCGCACTGAA
AATATGTCGGTGAAACTCGCGGATGGTACCACTCGGAACACTAAGATATTATTAACACAT
GCAGACGTTGAATTAAGTTCAGTATGTATACCTATTGAGTTTATTATATTCCCCGATTCT
CAGAATAATGAAACCTTGTTAGGAATAGATTTTATTTTGAAGGCACGATTAATAATTGAT
TTCTCTTCTATGACTTGGCGCTCGGCTGATCAGCCCCGGGACATTCACCCTTTGACATGT
GAAAATTCACGTGACCCCATAAGTTGCGCTTCTATAAACTTGTTGCGCGAGGATGAAGGC
AAATTCTTATCGGAGTCGGAAAAGGGGCGTCTGGTGGATTTGCTAGGTGAATATACTGAT
GTTTTCGAGGAAGTCGGTGAGCCGACTCCTTTTTCAGAGCATCGGATCGACACCGGCGAC
CACCCTCCTATCGCTGTACCTCCGTATCGTGTCACGCCGGCGAGGAAAGAGGTCATGCGC
GCCGAGCTCGACAAGATGCTAGCAGAGGACGTGATCGAGGAATGTGAGTCTGCGTGGTCC
GCGCCGTGTGTCTTGGTGCCGAAACCTAACGGTACGTATAGGTTTTGTGTTGATTATAGG
AAACTGAATGCGGTCACCAAGACCGATTCCTATCCCATGCCTCGAATTGATGAACTTCTT
CAGTCTACCAATGGAGGTTGCGTTATGAGCTCGTTGGATCTTCGGAGCGGGTACTGGCAG
GTTCAAACCCTGGAGCAGGATGATGCCTTCAAATCTCTTAAGACGCTACTGACGACATCT
CCGATTTTGGTACAGGCAGACTATACTAACCCTTTCATCCTTAGGACTGACGCGAGTGAT
TATGCTCTAGGTGCATGTTTGCTCCAGGGGGAGTCATCCAATGATGAGCGTCCCATTGAG
TACGCCAGTCGTCTTCTGACATCGGCGGAGCGCAACTATTCGACGACCGAACGGGAGGCG
CTCGCTGTCGTCTGGGCTGTGGAGCGATTCCGAGGCTACATCGATGGACATCTGGTGCAC
GTTCGTAGTGACCATCAGCCCCTGAAATGGTTGTTTTCAGTAAAGTCACCGAGCGGCAGG
TTAGTTCGCTGGGCTATGAAGCTTCAAGCTTACGATTTGCAAATTGAGTACACCCCAGGA
AAAGTTAATGTGATAGCCGACACGCTTAGCCGCCCAGTGACCGAGCTCAACTCGCCACCG
GACTGTGGAATCTGTCCCGTTATCGTCGATGTGCCCCACTGGGATGCCGCTTCGACCCGG
GACGCTCAGATGGCTGATCCGGAAATTTCCAAGATCATCATTGATTTGGAAGGGACCGAT
GAATTATCTGTTAATAGATGGTCTGAACGAGGCTATCTCCTAACTCAAGGCGTTCTATAC
CGCTACGCCGAAGATTCTGAGTCCGAGGAACCTCAGCTAGTCGCACCAGAGAGCTTGCGT
GGCAAGGTCATGTTCGAGTGTCATGACTCGCCCACAGCCGCTCACGGGGGGATTCAAAAG
ACCATTCATCGTATCTCCCAACGATTCTATTTTCCAGGTTTGAGACGCTATGTTACTGAG
TATTTGAAAACGTGTATAGAGTGCCAGCGGTACAAGCCGTCTAACTTTAAGCCAGCGGGA
CTACTCCAGACTCCAGTTCCAGCTCAGCGGTTTGAAGTTATTGCAGTGGACCTTTTCGGG
CCTTTACCCAAAGGACCCTGCGGTGAGAGGTGGATCCTGATAGTCGAAGACACCGCCAGT
AAGTGGGTTGAGCTGTTCGCTCTCATTGATGCCACTGCCGAGGTATGTGCAAAAACCCTC
GTTAATGAAGTCTTTATGAGATTCGGAGTGCCTCGCCGGATGATTTCCGACAACGGAGTT
CAATTTGTGGCCGATGTCATGCAAAAGGCTATGTTTGTTTTAGGGGTAAAACAAAATCTC
ATTCCTCTTTATCATCCCGAAGCCAATCCGGTTGAGCGGAAGAATCGGGACTTAAAGGCT
CATCTTGCCATATTGCTTGAAGGCCGTCACCAGCAGTGGCCTGAGGTACTGTCGTTCGTC
CGATTCGCTTTTAATAGTTCCGTCTGCACGTCAACCGAGCAAACGCCAGCTTATCTTACC
TTTGGTCGTGAGCTCCGATCTCCAATATCCGCTCAGCTTGATCTTCGCGCCGTCGTAGAG
TCCGAGAACTTTGTTCCCCAGATAAGCCCATATTTGTCCAAGCTTGCCGAGACCATCTCG
ACCGCTAAGGAGAATATTGAACATCATCAAGATATTCAAAAGACGCGCGCTGATCTAAGG
CGCTCTGAACCTTACCAGTTTGCAGAAGGGGATCTCGTATTGATGAAGACCCACGTACTT
AGTAATGCTAGTAAGGGTATTACGTCGAAGTTTAATCCTAAGCGGGATGGGCCATATGTG
ATTTCAAAAAAGGTGAGTCCTACTTCCTACCTTCTAGCATACGAGTCGTCGGGCGAAGTT
TTTGGTAAGTATCATGTCTCGGATTTGCGACCTTATCATGCGAGGGAGGATGTATGTCCC
GAGCCTGTGATTCCCAAGCGCCGCCGGGGTCGACCGCGTAGGGTGGTGGAGTAGACTGGG
TCTCATTCCGCGTTGTTTGTTTGACCAGTCAAGGATTTCTCGCCAGGTCAAAAGGGGGAG
TGTGTAACGTGCGGAACTGAAATATAATAAAAAGATCCTCGCACGCTAAGCGGAACCCTA
AAGTGTTGACCAACGCCGCGCGACCGACACCTGCGCAAGATTCGTAAAAATGCAGTCAGT
GAGTTTCGAAAAATTTGAATAACGCGCATGCGCCGGTCGCTGCACAAAATTATTAATTTA
AAAACTATCTTTCCTTGTTGTACCTTAAGTTGTAACGATTAAATAAATGATTAACATTAA
ATTGGCGCCTAACTAGTGGCCGTCATCGTATTTAAGTCGACGCGTACATAAATACTTACC
CACTAGAAATTTCGAGAAG
(4339 bp)

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