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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp39905_c0_seq2
Scaffold_idBomo_Chr3
NCBI non-redundant
(nr)		PREDICTED:_vacuolar_protein_sorting-associated_protein_11_homolog_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005776 C autophagosome
GO:0005884 C actin filament
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006904 P vesicle docking involved in exocytosis
GO:0006914 P autophagy
GO:0007032 P endosome organization
GO:0007040 P lysosome organization
GO:0008270 F zinc ion binding
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016192 P vesicle-mediated transport
GO:0019904 F protein domain specific binding
GO:0019905 F syntaxin binding
GO:0030123 C AP-3 adaptor complex
GO:0030136 C clathrin-coated vesicle
GO:0030139 C endocytic vesicle
GO:0030674 F protein-macromolecule adaptor activity
GO:0030897 C HOPS complex
GO:0031410 C cytoplasmic vesicle
GO:0031647 P regulation of protein stability
GO:0031902 C late endosome membrane
GO:0033263 C CORVET complex
GO:0034058 P endosomal vesicle fusion
GO:0035542 P regulation of SNARE complex assembly
GO:0046872 F metal ion binding
GO:1901998 P toxin transport
GO:1902115 P regulation of organelle assembly
GO:1903364 P positive regulation of cellular protein catabolic process
GO:1903955 P positive regulation of protein targeting to mitochondrion
GO:2000643 P positive regulation of early endosome to late endosome transport
Transcript
Level		FPKM:6.94 TPM:5.48
ORF EntryO_BomoMG15193_internal:A_BomoMG_comp39905_c0_seq2
Sequence
(Nucleotide)
TGCTTTTCGCGGAGTCGCTCTTGCGTACGAACGATCTACGTAAGTAGTCGCGGGTGAGCG
ACAGCGAGTTCCTGGAGGTCGATGACCGCGGTCGGGTAACGCGCGAGTCAGTTTCGTCTG
TAATGTCAATAGATGGCGTACCGCACACTCCGCTGTAGTCCGGTGGATGAGTTTGATTGC
CGACGCGCTCGACGGCCTCGCTCAGCGTTATGGGCATTTGTGATGCGTCGTCCGTTTGTT
GTTCGGGTCGAGACGTTATTCTCCTCAAAGTTCTGAAGCTCCTCCTGAGTGTGTGCAGGA
GCCTGGCGCCGGTGGCCGTTGAGTATGAGGGCGGCGGCGTGTACTTGGGGGGCGGGTCGG
GAGGCGCGGGGGCGGGCGCGGGTGCGGGGACGGGTGCGGGGACGGGCGCGGAGGCGGGCG
CGGGGGCGGCTTCCTCGCTCTCCGTAACGACGGTCAGCTTGTTGAACAGACCGCGTCCGT
AGTACTCTGATACTACGGAGTAAGGGTCGGGCTCGGCGAGCAGGCGCGCGTGCAGCGAGT
CGGGCGCGGGGGGCGGCGCGCGGGGGGGCGCCTCGCACGACGGGCACTCGCACTCCGACT
CGCACAGACTCTCGAAGCAATGCTTGTGGAAGGAGTGCTGGCACAGGAAGTGCACGCTGG
GCAGCTCCAGCAGCTTGGTGCAGGCGGCGCAGCGCGAGCTCTGGAACACGACCGGCTCGC
GCTGTATCCGCTGGATGTGCGCCTTCATGCGCTCGCCCTCGCCCCGGTACTTGCGAGCCA
GCTCCTGCTCGCGCGCTATCACCTCGTTCTCGTTCTTCAGTATGTCCATCAGGTATTTCC
TCACGTCTCCGAGAGTGTACGCGGAGTGACTGGCCAAGCAGTCCACGACCAGAGTCCGCG
ACAGCAGCTTTTCCGTATCTATGACGTGCAGCAGCTCGGGCAGGCAGGCGGCGGGCGGCG
GGTGCCACAGCACGTCCAGCCACAGCGCGGGGCACAGCGCGGCGCGGCGCCGACACACCG
CCAGCGCCGCCTCCGCCTGCCCCTCCCGCAGGTACAGCGACACCTGCGACCGCCATAATT
TATTCTCCTCGTACATATACAGCACTCCCGGTTTGAAGCCCAAGGTCTGACAAATGATCA
GTGTTTGATCTCTATCGTAATTGGCCTCGGGATCTCTGAGTATTCGTAGAACTTTCTCTT
CGTATTCCTTCTTCTCGCTCTCAGGCGATTTCACCCAGACATGTATATAGTGCTCGATGA
GTGCGTCGTAAACTAGTTTGGAACACTCCGGGTTATGAGCGACCATGTGCTCCAAAAACT
CTATGAGTTTAGCCGAGTTGCTCAGGAACATGTGTATGTAGTCGTCCGGTGCCGCCCGGT
CCGGCTCCCTGTGGCCCCCGGACAGCGACGTCTCGTCCACCAGCGGCTTGCTGCGGGGCT
TGTAGTCCGTGCACAGTAGTTTGAGCAGCTTCGTGCTATCTTCAGGTTCGTGCTGTATCA
GCCTGTGCCCGTACTTCTTCATGTACGCGTCGGCGTCCTCGAACTCCAGCTCCACGATGT
AGTCCAGGGCCTGCTTGAAGTCCTTCTTGTCTTCGATCACTATTTGAAGGTAGCAGTCGT
GGCGCTTGTGTATGGCCGCTAACGACAGAGCGTCGTCCACGCTTACTTGACGCACCACCT
TTATAGCCACATCCACATCAAAATCTATCGTCTTATCTTTAGTGTTGATAAATTCCTTCA
GCTTGCCCTGTTGGTCGTGCTGGTCGATCTTCACGTAGCAGGTCAGCAGTAATGTGGTGT
GGTCTTCGGTGGCGAAGCCCTTCTTATGTAGGGCTTCGAGGTATATGATCAGAGGCTCCA
AGTGACGGGACTCCAGGTACTTGCGAATGACGTACGAAGTCTCTAACCAGCCTATAGTTT
TGACGTATTGATCTATGGCTCCTTTCAAATCGCCCTTGCTGTACAAGTGATCCCCGTACT
GCTTGTAGATCTCGGTGAGACCTTCGACGTCGTAATGTTGGCTGCTCGCTATCCTTATAG
CGACGTCGTAGAGATTTTTCTTGAACAGCGACGACAGCTTCGACTGCAGGTCTTTCTCGT
TCAGATAGATCAGCTCCTTCTTCTTCGTGAGCAAATAGAACGAGCCCCACTCGGTTATGA
CCGCGTCGATTTCGTCGAACGTCTTCGAGAAAACAATGAACTTGTTCTGTATGTCGAGTA
TCGTGATGTGGCGACGACCAGTACGGCCCCGGCCGCGCGC
(2260 bp)

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