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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp39875_c0_seq1
Scaffold_idBomo_Scaf407
NCBI non-redundant
(nr)		PREDICTED:_transcription_elongation_factor_SPT6_[Bombyx_mori]
Ontology
GO:0000176 C nuclear exosome (RNase complex)
GO:0002805 P regulation of antimicrobial peptide biosynthetic process
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0005705 C polytene chromosome interband
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0008023 C transcription elongation factor complex
GO:0030707 P ovarian follicle cell development
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035101 C FACT complex
GO:0035327 C euchromatin
GO:0035363 C histone locus body
Transcript
Level		FPKM:14.48 TPM:11.44
ORF EntryO_BomoMG15049_complete:A_BomoMG_comp39875_c0_seq1
Sequence
(Nucleotide)
ATTTTTCTTATTTTTTAGAAATAAAAATTAACAAAGCTTAGCGTATTATTTAGATATAAG
ATTATAGTAGAATAGTAGTTTAGTTTAGTTTAGTCATGTCAGACTTTCTGGAATCTGAAG
CAGAGGAGAGCGAGTTGGATTCTGAGGCAGAAGAGCAGCCGGCAGAACGTAAAAAACATA
AACGGAAAGCAGTTCAAAGTGACGACGAAGACGAAGAAGAAGAAGATGACGAGGAACGTC
TCCGAGAAGAACTTAAAGATTTGATAGATGATGCACCAATAGAAGAATCAGGAAGTGATG
GCGAGGACTCTGATGCTAGTGTAGGACCAAAGAAAAGAAAAAAAAGTGATGATGAATTGG
ATGATCGGCTTGAAGATGAAGATTATGATCTCATTGAAGAAAATCTTGGTGTAAAAGTTG
CAAGAAACAAATTTAAACGTCTACGTCGACTGGAAGATGACGACAGTGACAATGAAGGGG
CAGATGATCCTGACCTGGAAAGAGAAGTTATTGCAGAGAAATTGTTTGTTGGTGGTTCTG
ATGAGGAAGATGAGAATCGTTCCGATTCAGCCGCACCACGTGGTGATGTAGAATATGATG
ATGATAATGAAGAGTTGGAATCAGATGCTGATGATTTTATTGTTGATGATGATGGTAGAC
CAATAGCTGAACGCAAAAAGAAACGCAAACCTATATTTACTGATGCGTCACTGCAAGAAG
GTCAAGATATATTCGGTGTAGATTTTGACTATGATGAATTTGAAAAATATGGCGAAGAAG
ATTACGAGGATGAAGACGAAGAGGATCTGGATGAATATATTGAAGATGATGAAGAGGAAG
GTGAAAGACGTAGGACAAAGAAGGGTAAAGCTAAAAGGCCAAGCAAGAAGTCGATCTTCG
AAATATACGAACCCAGTGAATTGAAGAGAAGTCACTTTACTGATTTGGATAATGAGATAC
GTAAAACTGATGTTCCTGAACGTATGCAAACTCGTGAAGTGCCTATAACTCCAGTGGAGG
AAGGCAGTAATGAATTGGAAGAAGAGGCAGAATGGATTTACAAGCAGGCTTTCTTGAAGC
CTTCAGTTTCCAAAGCTGATGCACAGGACGCCAGGGAGAGAACTAGACGAGGTTCAAGTA
CAATAACGAAGATTCGTCAAGCGCTTGACTTCATGCGAAATCAGACCTTAGAAGTGCCTT
TCATAGCGTTCTACCGTAAGGAATACGTGGAGCCAGAACTCAGTATCAACGATCTGTGGA
AAGTTTATAAATATGATGCTAAGTGGTGTCAGCTCAAACAACGGAAAGAGAATTTGCTGA
AGCTATTCGAGAACATGCGTGATTATCAATTGGACAAAGTAATGGAGAATCCCGATGCTC
CCATACCTGAAAACATGAGACTCGTCAAAGATGAAGATATAGAAAGATTGAAATCTGTAC
AAACTCCTGAAGAGCTGCGGGACGTACACGCTCATTTCCTGTTGTACTATTCCTGTGAAC
TTCCCGAAATGCAGAGAGTACAACGCATCAAGGAACGGAAGAAGGAACTTGAGGAACGAA
AAAAACTTGCTCGGGAAGAGGCCGAAAAGAACGGGGAAGATGCAGAGGAAGCAGCAGCAG
CCATTGAAGCTATAGAACTTGACGAAGAAGACCTAACGGACATCAAATACGCAGCCAAAT
CGGGACCTTATGAACTGTGCAGGAAGGCTGGTATCGAGCCCCTCGTTAAGAAGTTTGGTT
TAACTCCGGAACAGTTTGCCGAGAACGTTCGCGACAACTACCAGCGGCACGAGGTGGAAC
AGCAGCCCGTGGCGCCGCTCGAAGCCGCCGCTGAATACGTGGGTAACATCGGGTCGGCGG
CGGAGGTGGTGCGGCGCGCGGTGTACATGTGCGGCGTGCAGCTCGCGCGGGAGCCGCTGC
TGCGGGCCACGCTGCGGGACGCGCTGCGGGAGCGGGCCACCGTCTCCATCAAGCCGACCG
CCAAGGGCATCAAGGAGATCGACGAGAACCACGCCTGCTACAGCCTCAAATATTTAAAGA
AAAAACCAGTTCGAGACATTACCGGTGAACAGTTTCTTAAATTAACAATGGCAGCCGAAG
ACAAACTGTTAGTGGTCACCATCAGTGAGCAGATCGAGGGCAACACCAGCCCTAGTTACT
TAGAGGAATTGAAACAGCTCTATCAAAAGGACGAATTTGCTGCCACAGTACAAGCGTGGA
ATGAACTTCGCTCAGAGGCGGTCACCATTGCCTTGACCAAGATCGTCATGCCCGAGTTGA
GAAGAGAACTGCACGCTGTGCTCTTACAGGAATCTAAAGATTATGTTCTCAAGTGTTGTC
GTCGGAGACTGTACGACTGGTTGAAAGTAGCTCCGTACGAGTCTAGAATATCTGATGATG
ATGATGAGTGGGACGCCTCCAATGGTGTGCGAGTAATGTCGGTGGCGTACGTGCCGGACC
GCGCGCACAGTGCGTTCGCGTGCATCGTGGGCCCGGGCGGCGAGGTGGCCGACCATCTGC
GGCTGCCGCACCTGCTGTACCGGCGGAACGCCTGGGACGCGCTTGAGCGCCGCAACAAGG
ACGCCGATATGACCGCTCTCAGGAGGTTCATTTGTCGCAAGAAGCCGCACGTGATCGTCA
TCGGCGGCGAGTCCCGGGAAGCGCTCAATGTTAAAGCCGACATCTCGGACTGCGTTCAGC
AGCTGGTGGAGGACGAGCAGTTCCCGAGGATACCTATCGAGATAGCCGACAACCACTTCA
GCAAGATTTACAGCAACAGCATACGAGGAAGGAACGATTTCCGTGAATACCCAGACATCC
TGCGTCAAGCCATTTGTCAAGGTCGTCTGCTGCAGGATCCGCTGATGGAAATATCGCAGC
TGTGCGGCCCGGACGAGGAAATACTGTGCCTCCGATACCATCCGCTGCAGGATCAAATCG
CCAAGGACGATCTGCTCGAGGGTATAGAACTGGAATTCGTGAACAGGGTCAACGAAGTGG
GCGTCGACGTCAACGAGGCGGTGCTGACGGGCCGAGGGACCGAGCTGCTGCAGTACGTGT
GCGGCCTCGGCCCGAGGAAGGCGCAGGCCCTGATAAAACTCTTCAAGCAGACCAACCAGA
AGCTGGAGAACAGAACGCAGTTGGTCACGGTCTGTCACATGGGCCCAAAAGTCTTCATAA
ACTGTTCAGGCTTTATCAGGATAGACACGAACAGCCTCGGCGACAGTACCGAGGCGTACA
TTGAAGTGCTGGACGGGTCCAGAGTGCACCCGGAGACGTACGAGTGGGCCCGCAAGATGG
CGGTCGACGCTTTGGAGTACGAAGACGAGGACGCCAACCCGGCGGGCGCTCTGGAGGAAA
TCCTCGAGGCTCCAGAGAGACTTAAAGACCTGGACTTGGACGCGTTCGCTGAAGAGCTGG
AACGTCAAGGATTCGGTAATAAGAGCATAACCCTGTACGATATTCGAGCGGAATTGAACT
CTAGGTACAAGGATCTTAGGGTGTCGTATCGTTCGCCAACGCCCGAGGAACTGTTCGACA
TTTTAACAAAAGAGTCACCGGATACGTTTTACGTGGGGAAAATGGTCTTAGCGTCTGTGA
TCGGCATCACGCACAGGAAACCGCAGCGGGAGATGCTGGACCAGGCGACGCCCGTTAGAA
ACGACGAGACGGGGCTGTGGCAGTGTCCGTTTTGCTTCAAGAATGATTTTCCTGAGCTGT
CTGAAGTATGGAGCCATTTCGACGCGGGTGCGTGCCCGGGCCAGGCGACCGGCGTCCGGA
TCCGGCTGGACAACGGCCTGTCCGGTTACATACACATCAAGAACCTGTCGGACCGCCACG
TCACGGATCCGACCGAGAGGGTCCGCATCGGGCAGACCGTGCACTGCCGGGTCATCAAGA
TCGACGTCGAACGCTTCTCCGTGGACTGCACTTCAAAGTCTTCGGACTTGTTGGATAAGA
ATAATGAATGGAAACCTCCAAAGGACCCTTACTACGACCAAGAAACGGAAGACAAAGATA
TACGCAAAGAAAAAGATGCAAAACAGAACAAGGATCGCATGCAGTACGTAAAACGCGTGA
TAGTACATCCGGCATTCCACAATATCTCGTTTGCGGAGGCTGAAAAGCTTATGGACAAAA
TGGCACAGGGAGAGGTCATCGTGAGGCCTAGTAGTAAGGGTTCTGACCATTTGACCGTAA
CGTGGAAAGTCACTGATGGAATTTATCAACACATCGACGTGAGGGAGGAAGGCAAAGAAA
ATGCTTTCTCATTAGGTCGAAGTCTTTGGATACAGGGATCCGAATTTGAGGATTTGGATG
AAATAATAGCTCGTCACGTGACACCGATGGCGGGGCACGCCCGAGATCTCATTGCGTACA
AATACTATAAGCCTCTCGGCGGGATCAGGGATAAAGCTGAAGAAATACTCAAGGAGGAGA
AAGCCAAAAACCCTAACAAAATTCATTACGTTATCTCGGCCTCGAAGAACTATCCCGGGA
GATTTCTACTGTCCTATTTGCCGCGAGCGCGTTGTACGCACGAGTACGTGTCCGTGTCGC
CGGACGGGTACAAGTTCCGGCAGCGGATGTTCGACTCTCTTTCGGGATTGCTCAAATGGT
TCAAAGAACATTTCCGGGAGCCGCCGCCATCCGGCACGCCGGCACAGCGCGCCGCCGCAG
CTCGCACGCCGCACGGCGCAGCCTCCGCTTTATATCAGACTCCCGCCGCCCACACGCCGG
CCTTCCACACACCCGCGCACACGCCAGGACCTGCCTATATTAACACCCCCTACACACCAT
CCGCGCAAACGCCCTACATGACGCCCTTCGCGTCCACGCCGCGGCAGACAGATTTCTTGA
CGCCTGCGGCACCGCGTCACAAGGCGGCACCGGCGGCCGCCTACACCGAGCCCGCCGACT
GGCAGAAGGCAGCTGAAGACTGGGTGCGGCACCGCGGCGGGTCGGCTCGCGACACCCCGC
GCCGTACCCCGCGACACGACGCGCGCTCCACCCCGCGGCACGACGCCCGCTCCACGCCGC
GCCAGGACGCGCGCTCCACGCCGCGACAAGACGTCCGCTCGACGCCGCGACAAGACGTCC
GCACGACGCCGCGTTACGACGCGCGCTCGACGCCGCACTCGCAGATGTACACGCCGACGC
ACACGCCGCACACGCCGCGCTCGTCCCGCACGCACTCGGCGCGCTCCACGCCGCACACCA
ACACGTCGCCGCGCTCCATGTCGCTCGGCGACGCGACTCCACTCTACGACGAAAATTGAA
CCCTCAATCCACTTATATTTTTGGACCGCAACGTACTGAATTAATTATTCTTATTACGGC
TCCCCTTATAGTGGGCTCTCGTCCTCTCGTGTAGTGGAATCCTCGATACGGGCTATCGCT
TTGGCTTCGTTTTGCTTTTATTCAGTTTCGCGAGACAGGTCGATCGACGTGTTTTGATAA
TTTCAAATAGTTTAAGATCCTAATTTTTTAAATAAAATCACACAATGTTACTTACTTACT
ACCTACTTGAAACTAAAGCCATTCAACGAACCAAGAAAAAAAACCGTCAAATTGTCGTGT
TCGTGGGAACTCAATTAGGGCCTTAAGTATTTAAGTACATTTAGGAACGATTATATAAAA
TCAACGGAAAATATTGTTTAAAAATATTTATAATAATGAAATAGCTCTTCATTGATCAGT
AGAAGTATGTATGTACATATATACGAAATTGTAAGCAATGTTGCTTTTTTAATAAAACAG
TATACTGTTTTCAACCTCTGAAACAGATAAATAAGACTATTTATATAACAGATTGTACGA
TCATACGTCACTTTGCTTGTTTCAATTTGTCTTTTTTTTTTATTTCTTGACAATTGTTAA
AAGTAAAAATGTTTATGATGTTACGACGCTACAGCTCTGATATTGTTGTGCAAAATAGAA
GTATGTTATATATAAATAAATATTTATACAAAAATGCGTAATTCGTTAAGGCGCAAAATA
AAAGCAATAATAACTGATAGTTAGTTAAATTACATTCAAGCCTCACGTTTCAAAGTATAT
AACGTTATGTATATTTAAAAAAGTGCTAGGTTAGTGTAAACTACCCGATAACGACTATTT
ATAGAGTACGCACTTCAGGTATCTATAGAATTGCCGGAGTCTTTTCGCAGAGCCTTTGGT
TAATTTAAAAAGGTATAAAATAAAATAATTTTTTTCATAAAAAAAA
(6226 bp)

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