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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp39844_c0_seq1
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		hypothetical_protein_KGM_17243_[Danaus_plexippus]
Ontology
GO:0000166 F nucleotide binding
GO:0000178 C exosome (RNase complex)
GO:0000398 P mRNA splicing, via spliceosome
GO:0000460 P maturation of 5.8S rRNA
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:8.62 TPM:6.81
ORF EntryO_BomoMG14890_complete:A_BomoMG_comp39844_c0_seq1
Sequence
(Nucleotide)
TGGAGTCTATTCAGTGAAAATAAAACAACAAAATCTGAAAGAGAATCAGAAATGTACTCT
AAAATCTAAACTGATAAATTGATAAATGGAATGTACTAAATCAATATTGAAAATCTGCAA
AGTTACCTGTTTAAAATGTCTGACATAAATAGTTTGTTTGACTGTTTTGATGAAACACCA
ATAACTGAAGCTGCGATTCAGCTGCCAAATGTTAAAAATGTTGAAAAACCAAACTTGGAA
GAGTTGACTGCTGCTGGAAATAAGCGTGCACATGATGACATCCAGTACGCTGATACCTCT
GTATCAAAAAAGCCTCGCGAAGAAGAGGAAGACTCTGAATTGATTACCGACATAAATGTT
GATCTGCTCCAATCTCGTATAGTGATACACACGCTAGAAACTCACGAGGGCTGTACACAT
GAAGTGGCAATACCACCTAATCAGGAATATGCTCCTCTTTTACCACTGACAACTGAACCT
GTAAAGCAGTACAGTTTCATATTGGATCCGTTTCAAAAAGAAGCAATATTGTGTATAGAT
AATTTACAATCTGTACTTGTATCAGCTCACACGTCTGCTGGCAAAACAGTGGTTGCTGAG
TATGCCATAGCTCTATCACTAAAAAACAAGCAGAGAGTAATATACACAACCCCTATTAAA
GCTCTTTCGAATCAAAAATATAGAGAGTTCTCAGAGGAGTTTCATGATGTTGGTTTAATA
ACTGGTGATGTAACTATCAATCCCTCTGCTTCATGTCTTATCATGACAACTGAGATTCTC
AGGAACATGTTGTATAGAGGTTCAGAAATTATGAGAGAAGTTGGTTGGGTTGTGTTTGAT
GAGATTCATTACATGAGAGATAAGGAGAGAGGTGTCGTTTGGGAAGAAACACTCATCCTT
CTGCCGGACAATGTGCATTATGTATTTTTGTCTGCAACTATACCTAATGCACGTCAGTTT
GCCGAGTGGGTCTGTCGCTTGCATTCCCAGCCTTGTCACGTCATTTATACAGAATACAGA
CCCACTCCACTGCAACACTACATTTTCCCAGCCGGTGGTGATGGAATACATTTGGTTGTT
GATGAAAAGGGTATATTCAAGGAAGATAACTTCAACACAGCAATGACAGTGCTGAACAAT
GCAGGTGAAGCAGCAAAAGGCGACCAACGTGGTAGACGCGGCGGACCCCGGGATAAAAAT
CAGACCAATATTTTTAACATTGTCAAAATGATTATGGAAAGAAATTTCGCTCCCGTGATC
ATATTCAGCTTCAGTAAAAAGGATTGCGAACTATATGCCCTACAGATGGCGAAACTGGAC
TTCAACACAATTGAAGAAAAAAAACTAGTGGACGAAGTGTTTAGCAACGCAATGGATGTT
TTAAGTGAAGAGGATCGGAAATTACCACAAGTAGAGAACGTTATACCTTTGTTGAGGCGC
GGCATTGGCATACATCATGGAGGTCTACTGCCTATACTGAAGGAAACTATTGAAATATTA
TTCGGCTTAGGACTCATCAAGGCTTTATTTGCTACTGAAACATTTGCTATGGGATTGAAC
ATGCCTGCGAGAACGGTAGTGTTTACCAACTGTCAAAAGTTTGACGGGAAGGAAGTTAGA
TTTATATCGTCAGGTGAATATATTCAGATGTCTGGTCGCGCTGGTCGGAGAGGTCTCGAC
GACAAGGGTATCGTTATATTGATGATCGACGAGAAGGTTACGCCCACTGTTGTCAAAGGC
ATGGTGCAAGGGAAAGCTGACCCTATTAATTCTGCATTCCATCTCACTTATAATATGGTT
CTTAATCTACTGCGTGTAGAGGAAATCAATCCGGAATATATGCTGGAAAGAAGTTTCTTC
CAGTTTCAGAATCAAGCAGCCATACCGGATCTGATAGACAAGGTCAAAGCAAAACAGAAA
CAATACGACGCCCTGTCCGTTAACGAGGAGAACTCCGTAGCTTCATACTCCACCATCAGA
ACTCAGCTAGATTTGCTCGGGGACCAGTTTCGGTCGTTCATAACTAAGCCGGAGTACTTG
AAGCCTTTTTTGCAACCGGGAAGACTTGTCAAGGTGAAAACAGAGAAATACGAATACGAC
TGGGGCATCATAGTGAACTTCAGACATAAATCGAACAAAGGCAAGAAAGGACAAGAAGAG
AATCCTTTGACGGCCGAGCCCGCCATTATTGTCGACATCCTACTGCACGTGAAGACGGCG
ACCGGCGGCGACGGCGAGACCAACGTGCCGTGTCCGCCCGGCGAGTCTGGCGACGTACAA
GTGGTTCCAGTCGTACACACACTAATATACCAGATCAGTTCTCTTCGGGTGTACTATCCT
AAGGACTTGAGGCCTTCGGACAATCGGAAATCTGTATTGAAGACTATAGGCGAGGTGAAA
AAGAGGTTCCCCGATGGTCCCCCGCTGTTGAATCCCATTAATGATATGAAAATTAATGAC
TCAGTGTTTAAACAATGCGTCGATAGAATCAAGTTATTGGAAGAAAGACTATACTCACAT
CCGATCCATACAGACAAAAACAGAAGCGCCCTGACAGCTGCTTACGACAAGAAACAAGAG
TTATATGAAGAGCTACAGAACGCTAAAGCGGAACTGAAGAAGGCGAAGAGCATACTGCAG
ATGGACGAGCTGAAGAAGAGAAAACGGGTGCTGAGGCGGCTCGGCTACTGCACCGCCGCC
GACGTCATCGAGATGAAGGGACGCATCGCCTGCGAGCTCAGCAGTGCGGACGAACTGCTG
CTAACGGAGTTGATATTCAACGGGGTGTTCAACGCGCTGTCTCCGGAGCAGAGCGCGGCG
TTGATCAGCTGCTTCGTTTGCGACGAGAACTCCACGCAGGCCAGCGTCTCCGGCGAGGAG
CTGCGCGGCGTGCTCAGGCAACTACAGGAATATGCCCGACGAATAGCAAAGGTATCGATC
GATTCTAAAATGGATTTGGATGAAGATACTTACGTTAGTAAATTTAAATGTACACTCATG
GACGTGGTCCTGTCATGGGCCAAAGGAGCTTCGTTCTTGCAGATATGCAAGATGACTGAT
GTTTTTGAAGGTTCAATAATAAGATGTATGAGACGTTTGGAGGAGGTGTTGCGACAGCTG
TGCCAGGCTGCCAAGAACATTGGCAACACCGACTTGGAGAATAAATTCAGTGACGCGATC
AAAATGCTCAAGAGGGACATTGTGTTCGCAGCCAGTCTTTATATGTAGTTTTAAGAAGAA
CCGAAATTATACCAATATTGTTTTCGAAAAAAAA
(3274 bp)

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