SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp39608_c0_seq1
Scaffold_idBomo_Chr12
NCBI non-redundant
(nr)		PREDICTED:_U4/U6.U5_tri-snRNP-associated_protein_1_isoform_X2_[Bombyx_mori]
Ontology
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000481 P maturation of 5S rRNA
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006397 P mRNA processing
GO:0007050 P regulation of cell cycle
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0044822 F RNA binding
GO:0045292 P mRNA cis splicing, via spliceosome
GO:0045585 P positive regulation of cytotoxic T cell differentiation
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071013 C catalytic step 2 spliceosome
GO:0097193 P intrinsic apoptotic signaling pathway
Transcript
Level		FPKM:11.90 TPM:9.40
ORF EntryO_BomoMG13998_internal:A_BomoMG_comp39608_c0_seq1
Sequence
(Nucleotide)
GCCCGCCACGCCCGCGCCCAGCGCCGGCTCGCCCGCCAGCGCGCCCGCGCCAGACCCCGC
TTTAAGGTCGGCCGGCTTCTCGCTGTCAACGTCCACCCTGCTCCAGGCCCCGGAGGCCGC
CTCCTCCACGTCCATGTCCGGGTTGTGTTCCGGCGAGTGCGGGTTCTGCTTGGCGAAGTA
CGCCGGGGCTTCCCCGAGGGTCCGGCAGAACTCTGCGGTGGCGTCGAACAGCATGCCCTC
CGGCCCCGCCTCCACCTGCTCCTCCTTCACGCGCTCCAGGAGTTCTTCCACCTTAGGCAC
AGCGGCATCTTGCACCTCCTTGAGCCTGAGGCGGCGCGCCCTGGCCAGCGCGGCGTGCAG
CTCGGTGTCGGGCTCCGTCTCCTCCTCGTCCACCACCAGCGCCGCGGCCCCCGCCCGCAC
GTCTGTGTCGTCGGTGTCGAGTGGCGCGGCGGCGGCGTCGTAGGTGTCCGCGTCGATGGG
CTCGTCCTTGGGCTTGGTCCGCATCTTGCCCTTTCTCTTAGTCTTCTTGAACTTGGCTTG
GATCTCGTGCTGGTCCATGTAGTCGGCTGCGAGCTGCGGCTGCGGCAGCGCAAGCGACTC
CATGCGGCGAGAGGCGGGGCCTTGCGCGAGCAAGAGCTCTCTGCGCCTGTGAGCGTCGAG
AGAGGCTTCGTCCCCTATGACGAAGCCCTTGTCCTTATCGAGTTGGTCGGGCTGGATCTG
CTCGTCGTACTTGGAGAGGACGGAGCGTCGGAAGCCGAGGGAGGCCTGCAGCTCGGCCTC
CTCGTCGTAAGCCTGGTAGCCGGCGCGCGCCTTCTTGCGTTCTTCCACGTTCTTCTTGTA
TCGCTCGTTGTCAACAATATTGACATTGATGAGCACATCCTCTGGGTCTTCAGCTAATAT
TTCTTTATCAGCCAACGTTAGAATGGTTTCACGTTCATCTTCCAACGCATCGAGCTGGTG
CGCGACCCGCAGCCCCCGCAGGCTGGGCGCGCGGTAGGGGGCGGGCGCGA
(1010 bp)

- SilkBase 1999-2023 -