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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp39551_c0_seq2
Scaffold_idBomo_Chr24
NCBI non-redundant
(nr)		PREDICTED:_RNA_polymerase-associated_protein_Rtf1_[Papilio_xuthus]
Ontology
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007219 P Notch signaling pathway
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0035327 C euchromatin
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0051568 P histone H3-K4 methylation
GO:0051571 P positive regulation of histone H3-K4 methylation
Transcript
Level		FPKM:4.97 TPM:3.92
ORF EntryO_BomoMG13798_5prime_partial:A_BomoMG_comp39551_c0_seq2
Sequence
(Nucleotide)
GCAGATTTTGGTTTGACAGCGACTTTATTGTTTGTAAGTCGTACAAAGTATAAAACTTAT
TTTCTTTAAAAGAACTTGTTAAGTCACTTTATTTCTAAAGGTGGAATTTGTATTTCGATC
GCGTGTTTACTGAAGACGCCTCCATACCAAGAAATTGATTCATTAAATAGAATTATCAAC
CCTCGATATGATGATGCATGAGCAATGAGCGGGGGCGGTAACCTCAATTGATAATGACTG
TTGAGACGCAGACCTCAAGCCTCAAGGCGGCTGGCGGCGCTCGCGTTGCTACACGAACAA
CTTAGCGCCAGACGAGTCGTGAGCACGTTACTTGGCTGAGCAATAAGTAACATGAGTACG
TGTGTCTATAGTAAGGTAGGTTCGTTATGTAAGTCCCATAGGCGGTAAGATCACGACGCC
ATAACTCAAACATTTTCATTAAAATCAACGTATCATTCGAGTCCTAATGTATATTTGTTC
GCACAATCATCGATTAAAATTAACTTCACAGAGGCTCAATATCACTCGACACTATTGCAA
TGAGTTCAGTGTTGCCACTGCACAAACACAACTTCAAATTCCTGGCAACACTCGCGCGCT
TTTCGCTCTGATACACTTCCACAGTTGAACTTCACTTTTGTATTAATTATCTTCACGAAT
TCAAAGCACACCGGATGGTTCCCAGTCGGGGGGCCGGGCGGAGGGCCGCGGGGGGATGGC
GACACTCAAATGAGCCCGTGCCTCTTCTTGTACTCCTCGAGGTTGAGCGAGCGCTTGGGC
CCCGTCTCCTTGACCTTCGTCGTCACCTGCTTCGGCTGGCTCGACACGGATTTTGCTGCA
GGTAGATCTAGGTCTATGTTAATTTCGAAGTCGTGCAGCGAGTACAGGCTGGTGTCGCTG
GACGTGGGGTGCTCGCCGCGGGACCTCTTCGCCTCCTCGTGGTTTTCAAGTCTATCTCTC
TCAATTTTCTCCTTCTCCATCCTCTCTTCCTCAATTTGTATCTGGGCTTCCACAGCTGCG
GCCTGCTGGTTGCTTATTAGCTCCTGACTCCTGCTGCTTTGTGATTTAAAGTTCATGACG
GGCTTGGTGTGTCGCCTCGTGAACGGGTCGTCTGTTTTCTTTCCTTTATTCGCTTTGACC
TCCTCCATGATAGCTTTCTCGGCGGTTTCAACGTTCAGCTTCCGGTTCCTGTTGTTGATG
TACGAGATGCTCTGTATGGACGAGGTCCGCGTCTTGTCGAGCTGGTTGGCACGCTCCTCC
AACTCTTCGATCTTGGAGTTTAGGTCCATCACCAGTTCATCGTCACCCCTCAGTTGTGCC
ACGTCCCTCTCTTTCATAAGCTGCGTCTTTTTCATCGCATAGTTGGTCGGGTGAGATCTG
AACCTCTCCTTCTCTGCCACTATTTTCTCAATATCTTCTTCCTTAAATTCGTACATGAGC
GCCTGCTTGACTTCGTTGATCTTATTCCTGACGAAGTCCATGGTGGGCGGCTTCTTGTTC
GCATCCTTTAAAGCTTTGTACCATTTGTGAAATTCTCCGTCCGTGAATTCCTGATTACTG
ACGAATTCCAATCTAAACGCTCTATCCTGAGTTCCGTGCCTCAATTTGAAGCCTTTATTT
GTTCTTGTGTTGCCCAAGTTATAAACCTTCCCAGTTTCGTGCACGTCTATGATCTCTGCC
ACCCTGTATACAGGGTTCCCGTTGTTATTCCCTATGCCGATCCTGACGAAACACCCTGTG
ACTACACGAGTGAAAAACGGCAAGTGCACCAGTCTTTCCAGTTTGAATCTGCTTAAGCGC
AGTTTGTTGATTTGTTCCCTGGTGTCGGCGTATCTGACTTCCACTTCTTGTCGTTTCTTC
TCTCTCTCTTCTTCTTCTGCACCGGACGAGGATGAGCTCGTGGAACTTCTCCGAGCTGAT
TTATTATCTTCAGATTCAGAGCCGGAGTCGTCCGAATAAATATCTGAAGCTTTAAGTTTC
ACAGTCTGTTTGCTCGAGCCGCCTATTAAATCTGCTTCAGCGTCAGCCGGCGCCCTTTGC
ACTCTCGAAGCCCTTTGAGCTCGCAACGCGGCCATAGCATTCTGTCGTTTGTCATCCACG
GCGCGTTTCCGTTCTGTTTTACAGCCAAACAGCGGAGAGGCTGATCTCTCTGAGGGCTCC
ATATCTTTACTTTCGTCCAGTATTTCTCCAGGACTAGGAGGCGTCTCTTCTGGTTCATTC
TGGGGCTCTTTTTCTTTTTCCTTCTCTTTCTCTGCTTCTGCTTCAGCAGCTTGCCGCTGT
CTTTCTTTCTCTTTCTCCCTCTCCTTCAATCTCTGTTCACGCATGGCTCTCCTCCGTTTC
CTGGCCTCTCTCCTTCT
(2357 bp)

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