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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp39472_c0_seq1
Scaffold_idBomo_Scaf298
NCBI non-redundant
(nr)		PREDICTED:_transcription_elongation_factor_SPT5_isoform_X2_[Papilio_machaon]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000176 C nuclear exosome (RNase complex)
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007052 P mitotic spindle organization
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007549 P dosage compensation
GO:0008023 C transcription elongation factor complex
GO:0032044 C DSIF complex
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032785 P negative regulation of DNA-templated transcription, elongation
GO:0032786 P positive regulation of DNA-templated transcription, elongation
GO:0035101 C FACT complex
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
Transcript
Level		FPKM:14.73 TPM:11.64
ORF EntryO_BomoMG13509_5prime_partial:A_BomoMG_comp39472_c0_seq1
Sequence
(Nucleotide)
AAAAAAGGACAGTCGATTTGGTTGATTCTGAGGAGTATGAAGAAGACGAAGAAGAGGAGA
GGCTGAGGAAGAAAAGAAAAAAGGACAGTCGTTATGGTGGATTCATTATTGACGAAGCTG
AGGTGGATGATGAAGTTGATGAAGATGACGAATGGGAAGAGGGAGCCCAAGAAATGGGTA
TTGTAGGAAATGAAGTAGATGAAATTGGGCCAACAGCTAGAGAAATTGAAGGTCGAAGAA
GAGGCACTAACCTTTGGGATTCACAGAAAGAGGAGGAGATTGAAGAATATCTTCGAAATA
AGTATGCAGATGAATCAGCAGCCCTCAGACACTTTGGTGAAGGTGGAGAAGAGATGTCTG
ATGAAATAACTCAGCAAACTCTACTACCCGGTATCAAGGATCCAAATTTGTGGATGGTCA
GATGTAGGATTGGAGAAGAGAAGGCTACTGTTTTACTTTTGATGCGAAAATTTATTGCTT
TCCAATTCTCGGAAGAACCTTTTTTGATAAAGTCAGTTGTAGCACCAGAAGGAGTCAAAG
GCTATGTGTACATAGAGGCTTTCAAGCAGACACATGTTAAAAACATTATAGACAAAGTGG
GAACCCTTAAGTCTGGAGTGTGGAAACAAGAAATGGTGCCTATTAAGGAAATGACTGATG
TTCTCAGAGTAGTCAAAAAGCAATCAGGACTTAAACCGAAACAATGGGTCAGATTAAAAC
GAGGTTTATACAAAGATGATATTGCTCAAGTTGACTATGTAGACTTGGCACAGAATCAAG
TGCATTTGAAACTACTTCCTAGAATAGATTATACAAGACTGAGAGGAGCTTTAAGAACAG
TACAGAGCGATAGTGAAGCAGCAAAGCGAAAGAAAAAGAGAAGGCCTCCTGCTAAACCCT
TTGATCCAGAGGCAATCCGAGCGATCGGTGGAGAAGTTACTTCCGATGGTGATTTCCTCA
TATTTGAGGGCAATAGGTACTCTAGGAAAGGATTTCTGTATAAAAACTTTACAATGTCGG
CGATACTGTCAGAAGGTGTCAAGCCTTCACTTACAGAGTTGGAAAGATTTGAAGAGCAAC
CGGAAGGTATCGATATTGAGTTGGCTGCTCCCGCCAAGGACGACCCTGCCGGCTTGCATT
CCTTCTCCATGGGTGACAATGTGGAAGTCTGTACTGGAGATCTTGCGAACTTGCAGGCCC
GCATCACTGCTATCGACGGTTCGATGATCACTGTCATGCCAAAACACGATGGTCTTAAGG
ACCCAATTGTCTTCCATCCGAATGAGTTGCGCAAGTACTTCAAAATGGGTGATCACGTGA
AAGTGGTGGCTGGGCGTTACGAGGGCGACACAGGCCTCATAGTGCGCGTCGAACCGCACA
GGGTCGTGCTTGTTTCCGACCTCACCATGCACGAGCTTGAGGTGCTGCCCCGTGACCTAC
AGCTCTGTTCAGACATGGCGACTGGCGTTGACTCCCTCGGACAGTTCCAGTGGGGAGACA
TGGTGCAACTGGATCCACAGACCGTCGGAGTTATCGTGCGCCTCGAGAAAGAGAACTTCC
ACGTGCTCGGCATGCAGGGCAAGGTCATCGAGTGCAAGCCGCAAGCGCTACAGAAACGCC
GCGAGAACCGGTTTACAGTCGCGCTCGATTCCGAGGAGAACACGATTCAGAAGCGCGACA
TCGTTAAAGTAATCGACGGGCCGCATGCCGGACGCGACGGTGAAATCAAACATCTCTACC
GGAACTTCGCCTTCCTCCAGTCGCACATGTACCTCGACAACGGCGGCATCTTCGTGTGCA
AGACGCGCCACCTGCAGCTGGCCGGTGGAGCCAGGGGAAATAATGCCACCGCCGCCGGAC
TCACGCTCGGCTTCATGTCGCCGCGGATAGCTTCTCCTGCACACCCAGGGGCCGGCAGGG
GAGGCTCCACCCCTCGCGGTCGTGGGGGCCGAGGCGGCGGCGGAGGTCGAGGCGTCACTC
GGGATCGCGAGCTCATTGGCCAAACCATTAAGATCACGGGGGGACCATACAAGGGAAACG
TCGGGATCGTCAAAGACGCGACCGGCAGCACCGCGCGCGTCGAGCTGCACTCCTCCTGTC
AGACCATCTCCGTGGACCGCGGGCACATCGCCGGGGCGGGGGCCGGGGCTGCGACCGGCG
GGGCCTCGTCCTACTCGCGCACGCCGTCCCGCACGCCGGCCGCCGGCGCCGCCACCCCCA
CGTACCGCGACACGGGCATCAAGACGCCTATGCACGGCGCCGCTACACCCGTCTACGAGG
TGGGCTCGCGCACGCCACACTACGGGTCGTCGACCCCGGCGCACGAGGGGTCGCGCACGC
CGGCGCACGGGGCCTGGGACCCGAGCGGTGCCGCCACCCCGGCGCGACCGGACTTCGACT
ACGAGCCGGACGCGTACGGCGCGGGACCGTTCACTCCGCAGACGCCCGGCGCCATGTACG
GCTCGGACCACACGTACAGCCCGTACAGTCCGGGCCGGTCGGAGGGCGAGTCGGCGGAGG
CGGGTGCGTGGGCGGCACCAGAGCTCGTGGTGCGTCTGAGAGCGGGAGCTGCGGACGGTC
TGGCCGCACAGACCGCGGTGGTCCGTGCGACCGGCGGGGGCTCGTGCGCGTTGTACTTAC
CGGCGGAGGAGCGAGTGGTGTCCGTGCCGCCGGACTTGTTAGAGCCGGTGCTGCCTCAGG
CGGGAGAGCGCGTGAAGGTGATCGCGGGAGAGGACCGGGACGCGGTCGGACAACTTATCT
CCATCGAAAACCAAGAGGGAGTCGTCAAATTCGGCACCGACGACATCAAAATCATGCAAC
TACGTCATCTTTGCAAGATGGCCTCTTAATTCTATCGACCGGTAAATACCTCACAATTGT
GTTAATTGTATTTTCATCTTCTGTGGGAGACGTAAGTTGCTTGTGTTTTTCTCAAATGAA
GAAATAACTAAATAAAAAAATGTAAAATATTCGAGTTTTTTAATGAAAAATTAGGAATTA
ATTAAATGTGTAATAAAATTAATCAGGCAGCCTTAAATTATTTACGAAAAACGGACGCTC
CGAATTGAAAACTCACTTTGTGAATAGAAGTCGAGTAAAAAGAAATCAAGAGCAAGAACA
ACAATATCACATTTAAAATTTGGAAAAAATCTATCGAAATATTCAGATACTGCTGTTTGT
TACATAAAAAATAGTTAATAAAGTGTTAATTCAATTTAAAAAAAA
(3225 bp)

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