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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp39437_c0_seq2
Scaffold_idBomo_Chr15
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_TRIP12_isoform_X3_[Bombyx_mori]
Ontology
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
Transcript
Level		FPKM:1.88 TPM:1.48
ORF EntryO_BomoMG13356_5prime_partial:A_BomoMG_comp39437_c0_seq2
Sequence
(Nucleotide)
TTTTTATTATTATATGGTTTATTGGAATTGTTACACATTAACTTTGCACTTTTCATTTAC
TCATTTATGATACTTATTGAATCAAAAACATACACCGTTTGGTAATAAATGCCATATAAT
TCAGAGGACACTCCAAGGAGGACAATATAAAGTTAGAGGCCATCAGTGACCCCATCAAGT
GACAGTACATTTCTAACATACATTACTGAAGCTTTTACAGCTTTACCATATATAATTATT
ATTTAAATCGACTTCTTGGGAAAATTGTGAGTTACAATAGTTATTTGAAATGTTTTCTGT
AAACAGATAAAATAGCCATCTAGATATATTATATTTGCCACAGTCTACATCCACGCCACA
TCTAATCTAAAGAGCGTCACTCTGGTGTATTCAAAAAGAAATATACAAAGCTATCACATT
AAATTAACGCAAAATATGATATAAACATATCTATGTAATCTAAAAGAATCGAAAATATGA
ACAAAACTAAGAACGCCGCACTTTCAGTGTCCATCACATTATAAAATATAGGTTCTGATT
GCACATAAACATTTGTCCAGAGCTTATACACTGCTGACTATAACAAAATTACAATAAGAT
ATCACTAACCGCATTCACACGTGTATACAAAGGGGGCGATATATGTAATCACAGTAAAAG
AGGAAACTTGGAGCCAATTATGAAAGGTGGAACGAATGTTGTCCCTCAGAAGCAGCGAGC
CGTAGCTTAGCGCGCATCACCTCAGCGCTACTGTAGTCTGGCAGCTTCAAGTAGTTGACA
CATGTCATCACTGATGGCAAATATTCATCCGGATCCAATGAAGACTCCAGCGATTTACGC
ACCACAGTTAGTGGTGGATTCAATGCCTTGAATCCACCAGTTGGCAGCCTTGGACTTCCA
GTAACAAACTGTAAGAAGTGTCGTTGTTCTTCACGGTTGTACGAAGCCAAAATATCAATA
AGCATGCGTATAGCCCGCGATTCTGCATTGTATCCATGATCCGGACGAATACATTCCGCC
AGCATACGTGGATCCCATCGTTGGTCACGACCACCTGAAGGACTTCCGCAAAACACTTGT
TCCAACTCTTCAGGATAAAATATTTTTAAGTTACTCAAAGGAAATACCGACTCAAATCCT
TCTTTGAAAGCTTCCATCTGTTTTGATACACCTTCAAAAAGTAGCCAATGAGTTACGAGA
TTAATATAATTTTGCAAATTGTGCGCAGTGACGGGCATGTCTCTGCCACCCCGACGCAGT
TCCGTGCATCCGTCTCCGGGCAATATGAAGTCGAGCCCGAGCTCTTCAATCGGACATCCA
TCTAGCTCAAGGTTACTTATAAGTTGATTCTTCTGGTCCTGTGTATGTCGGGTGTCGGCT
GCGATGTGTTGTGCGCGATCGGCGACGCGCCGTAAACGACACAGAGAACGCCACAGTTCG
GGCGCCACGTGTCGCACGTCGCTCAAGCTTAGCCAACGTTCTTCGTTCACCACCCATCGG
TACATTGTTACCGACAGAGGAATATCCACCATTCGTGAATCCATAACCGCTTTAGCCATG
AACTTTCCAAGGAAGCGGAATTTGGCTTTGACTCGAGAGAGATGAGATGCGCGGGCGTTG
CGACCTAGCGCCTGCGGAAAGAGTCCGCACGGCCACGAAACGAAGGCAGCCGGCTCGGGA
GCATCTTTATCACGGTCCGTCGGTGAAGTGGCGCGCGTACGTTCTTCGTCCAAGTTCAAA
CCGTCGCGTACCGAAGTAGCGAGGCGGGCCGCCGCTTCGCCCGATTTCACAATTTCACCC
CCGAAAGAGCTAGGCTTCTGTTTGAAGTTTTCGCTGCCGTGCCAAAGATCGAGATCCGCG
CGTTGCAGTTCTTGCGAGACCAGCGCGTAGAACTCCAAGGTGGGCCCGAGACCGGTGCCG
ACTTCGTTCTCGTACTGAATCTCGAGGAGCGCCTTGGTGTGCGCGAACTCGTGCATGACG
TGTTCGGCCTGGCGTAGCACGTTGTGTCGCTGCAGCAGTGCCGACTTCGTTCTCGTACTG
AATCTCGAGGAGCGCCTTGGTGTGCGCGAACTCGTGCATGACGTGTTCGGCCTGGCGTAG
CACGTTGTGTCGCTGCACGGTGCGCTTGCGTCGGTCGAGGCGAGGCGCCACGCGCTCCGT
CTCGCCGCCCGCCGTCCCGCCGCGCTCCCCGCCCGCCTCCAGCAGCCGCTGCAGGGCGCG
GTCGCGGTCGAAAGACACCACGTAGAATAACAAGTGCCGACACTCGAACGGCAACACGAA
CGGACATGCGTAGGCGATCTTTTTTAGCCACGGCGGTAGATTGCCTGTCATTATTACTAA
TGGATCTTGCAACTGTCTATTGGCTTTGGCGGCGAGCTTAGCATTGATGAAGTCTGCGTG
CGGCACGAGAGGGCGGTGGTCCGGCAGACAGGCGGCGCGGTAGAGCGCGTGCCAGTGGCG
CGACAGGGCGTGCAGGGCGCGCAGCACGCCCAGCGCGGGCAGCGAGGCGTCCCGCACGTC
GCCCTCCGTGAGCAGCGCCGCGCGCACCATCACCACCAGCGATGACGCACGCGCCGGCAC
CGCGCCCTCGTTCCAGAGTAAATCAGGTTTTCGTCGGGATGAGATCTTTGTGGGTTGTCC
TTTGCCTTTCTTTGACGGAGTGCTTTCGGAACGCGGTTGTTCATTTGGCTCCACGGCGCG
ATAATATATCGTGTGTGTCTGGACCCATATCCCCGCGTTCGCCAATGGAGTTTCGGTGTC
CGTGTCGGCGTCCGTTTGTTCCCCGAACTGTCGCACCGCCTGGTACACGGTCATGTTGTA
CGGCAGCACTGTATCGCCGATCAGGAACTCGAGTTTGTGTTCAGAATCGTTGGTGGGCTG
CGGCGGCGCGGGCAGGGCGTCGTCGACGTCGTCATCGGAGGCGGGCTCGTCGTCCGAGTG
CGCGCCCGCAGAGTCCGAGCGCGTGCGGCCCTGGGCGTACCCGCGCTGCGCCAGGTATCT
CTCGATGGCTTGAACTAAAGCTAATGGGTCTATTCGTACTACACCACCCTTCCATTGCTT
CAAAGTGTTGCACGAAGGATGACGTTTGAGATCACACATGAGCTGGTGCGTGTTGAAGAA
TTTAAGAGCGGACGTGGCGGGACGGGCCGGTAGGTCGTGGACTCGCACCGGAAACTGCTC
GAGATGCGACACGCACGCGTTCACCTTCGCCACCAGCGCACACAAGGCCGTGCTGCTGCC
CAACGACTCTTTCCAATCGTTTACTTCAGGTTCAATGGGCATCTCAGCAAACACATGTAA
GAATAAACGCAGTCGCTCTTCACACGCTTGCACCAAATCAGCGGACTCCTGTCCTTCGCC
ATCGCCGTCGCGCTTTTCCAAACCATCCACTTCCATATCGAAGCCAGTTAGGTATTGGTG
CAGGGCGCCCAATACTCCGGAATGGTTCACCTCGAAGGGCGAGACGTCGTGATGCAGCAG
CGTGTCGCGGAGATGTGCCAGGGCGGCGCGCGAGTGCGCAGCGTGCGGCAGCGCGGCCGC
CAGCGCTCCCAGCTGCTCCAGCGCCCCGGCGCCGCCGCCCAGCGCTCCCCACTCGCAGCG
CAGCCGACGCGCCGACCACGAAATCCACTCGCGGACTTTCTCTTTGTTCTGCACGGTGAG
GTTGGCGCTGGCGTGCGGCGAGGCGAGCAGCGCCGTGTCCTTGTGCTGGTGCGGCGCGCG
GCCCCAGCGCGACGGGTTCAGCGACGACAGGAACGACGCGGTCTTGGACGCGCCGCTGGG
CCGCCCGGCGCCG
(3793 bp)

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