SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp39313_c0_seq2
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		PREDICTED:_roquin-1_isoform_X4_[Bombyx_mori]
Ontology
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0010494 C cytoplasmic stress granule
GO:0010608 P posttranscriptional regulation of gene expression
GO:0035613 F RNA stem-loop binding
GO:0042129 P regulation of T cell proliferation
GO:0046872 F metal ion binding
GO:0050863 P regulation of T cell activation
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061158 P 3'-UTR-mediated mRNA destabilization
GO:0071347 P cellular response to interleukin-1
Transcript
Level		FPKM:2.82 TPM:2.23
ORF EntryO_BomoMG12885_3prime_partial:A_BomoMG_comp39313_c0_seq2
Sequence
(Nucleotide)
GACGGATCATGTTTTGAAGTGGATAGAAGTATAAAGTGTTATTTTTGTGATGAGTGTACG
TGTTATTTATAAGAATGCCAATTCAGGCGCCTCAGTGGACGGACTACCTAACCTGTCCGG
TGTGCTGCCGAGAGTTCGGTGCTCCGCCCCGGAGTCCTATCAGCCTCAGCTGCGGCCACA
CCCTCTGTAGGCACTGTCTGATTCACCTTCATCGGAAACAATGCCCCTTCGACCAGACGA
TCATACAAGTTGAACCCGAGGAGTTGGTTGTGAACACGGCGCTGCTTCAGCTGGCGGGCT
ATGCGCCACCTTCGCAGCCGTATCAGCCGCCTTGTATCAAGGCTCTCCCGGAGTCGGACA
GGCAGGCGTACGACACTGTTATACGCACCATGGAGGAACTTGCTGTATTCTTGAAATGCT
CCGGAAACGCCAATATGAGTGGCAACGGGAATCGACTTTCGAGGCCTATGCAGAGGAAGC
TGGTAACGCTGCTGCAGTGTTCGATAACAGACGAGGAAGGTCGGGGCAGGGCCGCACGGG
CAGCCAGGTCTCTTGGTGAACGGACGGTCACTGAACTCATACTTCAACATCAGAATCCGC
AGCAGCTAAGCGCCAACTTATGGGCGGCAGTGAGGGCGCGTGGTTGCCAATTCCTTGGTC
CTGCTATGCAGGAAGAGGTGTTAAAATTGGTACTCCTCGCACTCGAAGACGGTTCCGCAC
TCTCCCGAAAGGTACTAGTGATGTTTGTGGTTCAAAGACTGGAGCCGCATTTTCCGCAGG
CCTCAAAAACAAGCATCGGGCATGTAGTGCAGCTTCTGTACCGCGCCTCATGTTTTAAGG
TATCGAAAAGGGAGTCAGATTCGTCGCTCATGCAACTCAAGGAGGAATTCCGTACGTACG
ATTCATTGAGGCGCGAACACGACGCTCAGATAGTTCAGATCGCCACCGAATCAGGTTTGA
GAATCGCACCCGATCAGTGGAGTGCTTTGTTGTATGGCGACACCGCGCATAAGAGTCACA
TGCAGAGCATCATAGATAAATTACAGACGCCTCAGTCATTTGCCCAATCGGTCCAAGAGC
TGTTTGTCGCGCTGCAACGTACCGGAGACCCGGAACAACTGGTGACAATGAGCATGCATC
TCGATAAACTCGCAAACATCGACGCCAACGCCGATGCTAAAAGCCCAACATGGAAGCAAA
TGGCCGATGTGATGACGTCATTAAAGGAGGTTGTGATCGGACTGATCAATTACATTCAGC
AACAAGCGGCCGGAAAAGACATGAACCAAGGGCAAAAGGATCTACGAAACGAACCATCAA
CTAGTCAATCATCACCGCAAGCCCGTACGACACCGACACCTACCCAGGGGAGGTACAAGA
TGGCTATGTGTAAGGATGTTCTGAGATCATTGTGTCCGAGG
(1421 bp)

- SilkBase 1999-2023 -