SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp39297_c1_seq5
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_F_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008134 F transcription factor binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017025 F TBP-class protein binding
GO:0030529 C ribonucleoprotein complex
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:9.13 TPM:7.21
ORF EntryO_BomoMG12828_3prime_partial:A_BomoMG_comp39297_c1_seq5
Sequence
(Nucleotide)
TTTGTTTCGAGAATATTTTCTAATCTTTCTTTGTCAGTTAAAAATTAAAATACTTTTGTT
TTCAAAAATATAATTTACTCTATATTATTAATAGCAGGAGTAATGTTGGGGTCGGGAGAT
AGCGGCTATATTGTAAAATTGCGTGGCCTGCCTTTCTCCACCACCGTCGAAGATGTCATC
GATTTTCTAAACGGGGTTAAAATAGTTGATGGGAAAGCTGGTGTGTATTTAACTGAAATA
CGTCCAGGACGTCCATCAGGAGAATGCTTTGTAGAAGTTGAAAGTCAAGAGGATGTGGAC
CTTGCACTCAAAAAAGACAAGGAAAATTTAGGAAAAAGATACATTGAAGTATTTGCAACT
GATCGGCAAGACATGGAATGGGCTCTTAATGCCATGCGGCAAAATGAAAATGGATTTGAC
AATGTTCCATTTGTCTCTGATGACATGGGTATTGTGAAACTCCGGGGCTTGCCTTATGGT
TGCTCCAAAGAAGAAATTGTACAATTCTTTGATGGTATTCCGGTGGCACCGGACGGTGTC
CACTTGCTCTCGGATCAGACGGGGCGGGCTTCGGGCGAGGCGTTTGTATACTTCGTAGAC
AAGGAGAGCGCACAAGAGGCTCTCATCAGAGACAGGGAGAAAATAGGACACAGGTACATA
GAGGTGTTCCCGAGCGACAGTGAGGAGGTGCGCGCGTACGGCGGCGGCGGCGGGGGGCGC
GGGGGTGGTGG
(731 bp)

- SilkBase 1999-2023 -