SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp39290_c0_seq1
Scaffold_idBomo_Chr13
NCBI non-redundant
(nr)		PREDICTED:_splicing_factor_3A_subunit_2_[Bombyx_mori]
Ontology
GO:0000245 P spliceosomal complex assembly
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0010976 P positive regulation of neuron projection development
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:9.50 TPM:7.50
ORF EntryO_BomoMG12815_complete:A_BomoMG_comp39290_c0_seq1
Sequence
(Nucleotide)
AATTTCAATTTAATTTAATGTCAAAGTTTAACTACTTTGTCAACTGGACAATTAATATTC
TAAGCTTAAAATAAGTGTTACTTTTAATTAAAATGGATTTTCAAAATCGCCCTGGCGGTA
AAACTGGTGGAGGAGGTGTAGCGTCATGGTCGGAAAGTAACAGAGACCGGCGGGAGAGAT
TACGACAGCTTGCACTAGAAACAATAGATTTAAACAAAGATCCATATTTTATGAAAAATC
ATTTAGGGTCCTATGAATGTAAACTTTGTTTAACCCTGCATAACAATGAGGGAAGTTATT
TGGCTCACACGCAAGGGAAGAAGCATCAAGCCAATTTGGCACGTAGAGCTGCAAAGGAAG
CCAAAGAAGCGCCTCAACAGCTTGCCCCGGAAAAACCTAGAATTGAACCTAAGAAATTTG
TGAAGATTGGTAGACCTGGTTACAGAGTAACAAAACAGAAAGATCCTGAAACTGGACAGC
AGAGCTTGCTCTTCCAAGTAGATTATCCAGAGATTGCAGAGGGTGTTATACCTAGACATA
GATTTATGTCTGCTTATGAACAGAAGATTGAGCCTCCAGACCGCAGATGGCAGTATTTGT
TATTTGCAGCAGAGCCTTATGAAACTATTGCATTTAAAGTCCCTAGCAGAGAAGTTGAAA
AGCATGATTCAAAATTCTGGACTCATTGGAACAAGGACACAAAGCAGTTCTTTTTGCAGT
TTGCATTTAAGATGGATCAGTTACGCATGCCTCCCCCCCATCCCAAAATGTGGGAGGGTC
ATAGCATGAGGTTGCCTCCACCTCCTGGAGCACCGATGTTGGGAGTACCACCGCCACCAC
CATTATTACCAGTGCCCCCACCACCACCCTCTATGTAATTAGTTGATATTTTTCCAATAA
AGTTTTTGA
(909 bp)

- SilkBase 1999-2023 -