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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp38902_c0_seq3
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		U1_small_nuclear_ribonucleoprotein_70_kDa_[Trichuris_trichiura]
Ontology
GO:0000166 F nucleotide binding
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0006397 P mRNA processing
GO:0007052 P mitotic spindle organization
GO:0016607 C nuclear speck
GO:0022008 P neurogenesis
GO:0030529 C ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0043484 P regulation of RNA splicing
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0071004 C U2-type prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:26.42 TPM:20.87
ORF EntryO_BomoMG11856_complete:A_BomoMG_comp38902_c0_seq3
Sequence
(Nucleotide)
TTTTTTTTTTATTCTTAATTTTATTGGGAATCAAATGCTGTACATGTACATTTCTCTGGG
TGTATGGGGGTCAATACATGGACAGATCCGGGTTGTACTTGGTCTCATCCGGAGGTTCTT
GCTTGATCATCAGCCCTTCGTGCTGTTCCATCGAGTAGTCGTCGAGCGGCTCCTGTTTGA
TGTGTATGTCGTCGGGCTTGAGCTTGTGTTCCTTGTCCCGGGAGCGGCGTGAGCGCTTCT
TGTCCCTTCGAGAGCGGCGACGCTCCGAGCGCGAGCGGGACCGGCGGCGGCGGCGTGACT
CTGGTTCTTCCTCGTCGCGCGTCTTGGGCCTGCGCGAGCGGGAAGATGAGCGCCGCCGCG
AGCGGGAGCGGGAGCGGCGCCGACTCGCTCCGTGTTCCCTGGGCGTGCCGCCCTGTCTCC
CCCTGTCCTCCCCGTGTTCCCGGAGGTGTCGTTGTTCGGCCCTGTACCGTTCCCTTTCCC
TCTCGTTGTCCTCCCTTCCGGAGTGTTTGATGTTGACGTCAGCCCCCCCGCGACGCGTCC
CCCCCAGTCCCCCACCTGTGAGATACAGCATTACTTATAGTGATATTTTTAGATTATAAA
TTCCTGGCCTAAAATAGTAAGTGTACTATTTTAGGTCAAGAATTTATAATCTAAAAATTT
ATGATATTGAATTTTTATTTTTATAATTATTTTTTTTAATTATTCCTCACTTGCAGATAC
GATTAATATTGCCATTGCCTTGTCTTTTTTGGATGATATTTGTTGTATCTCAAGCAAAAA
ACTAGAAATCAAGTTGCTATCAAAAGTAACTTAGCTGCGATACTCCATGAGCACATTATG
AAAGCAATGACCACTCCTAGGACGCGGCGATGTGAGGTCTCGTACAAACTGCACAACCCT
ACATATCTTTATTGGAATCAACGTTGGTCCGGGCCGAGGAGTCCTGCGGTCCCCCACTCA
CTCCGCGGCCCCCATCTCTCTGCGGTTCCCCTTCCACGCAGCGGCCCCCTCCCACTCCGC
GGCCCCCCCTTAGTTCTGAGCGGGCGTCGGACGGGGACCGGGCGAGCGGCGTTGCGTCCG
GTTGCAGATACGTACCGAGCCGACGTGGTAACCATCCCTTGACCGTCCTGGCGCGCTCCA
CGTCCACCAATACCCGCTTACCGTCAATCTTCTTACCGTCCGCGTGCTTGTATGCCGCTG
AAATACACCACGGAAAGATAATTACAAATAAAGCGATCGGACGCCTCATTCCACGTCTTA
CCTTAACGACAATGCCTTTAATTAAATCAGTTCAATTTTTATACTTTCTTCTCCCGACTA
TTTCCAGCTTACCATTTTATACTTTGAGACAGACAAAACTTACCGATCCCTGGTCAAATC
GTTCGTTTTGTTTTAAATAATAATAATAATTTAATTCTAATAAAATAAATATCACGTAAC
GACATTGAGACACTACAAATAAAATTGAAACTAAAACATCAATTAGGGCAGACGAATTAA
CATTTGTCGATGAACTGTTAGATATCTCAAACGTGAGACATGAGGTCGAATTCAACTTTC
ACACACTTTATTCGTTCATTAGTTTCGTATTTAGTCCAAAACTAATATTAAAACGACATG
TGTACAATGGAAACGTCACTTACTTAATGACAGATGTCAAAATTGACCGCTGCCATTTTG
ACACTGACTCTTCTCTTTATTGCTCTCGGCCCGCTCGGGGCACCGTTAATTGATTTCGCA
GCGGAAACAGGCAGGGCTCACGATACACTCTCCCCAGACACAGAAAAAATAATCGGAAGT
TTGATTTTGACTTTAGTTGGCCCCTTTAGTGTCACAGTATTTATGTATTTTTTTATAATT
TTTTATTGGAAATACATCACCCTGCGTGCGCGTCTGGTGACGATATAGACTATAATATGT
TTACTGTCAAACTCAAGTTTCAATTTTTTGTCAAAACCAACCAAAATAAACATTGACGGT
TTTGGAAGAAAAAAAAACCTGTCAAACTTTTAAGAATCTCAGTGTGTACAGGTGAAAATC
CGTACACAAATATA
(2054 bp)

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