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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp38264_c0_seq2
Scaffold_idBomo_Chr12
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_40_homolog_A_isoform_X2_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005685 C U1 snRNP
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007010 P cytoskeleton organization
GO:0008360 P regulation of cell shape
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016477 P cell migration
GO:0016607 C nuclear speck
GO:0032465 P regulation of cytokinesis
GO:0044822 F RNA binding
GO:0070064 F proline-rich region binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:0.85 TPM:0.67
ORF EntryO_BomoMG10544_complete:A_BomoMG_comp38264_c0_seq2
Sequence
(Nucleotide)
TTCATACTCAAGCTTGATGCTATTAGATATTATTTTCTCATTGTGCTCAGGTAATATATA
CATATACTGCTTCGACTGCAAGAGCGGTACCCTTTCCTCTTGTTTAACTTATTATTAATG
GATTGTTGAGTGTAAGTGTGTTATTTACTTAGTTTTTATTAAAGAACTGTTATGATATAT
CGGGGACGACCTTATGTGTCGTCGAGTTCGTCGTGTTACGCGGCAACAGAAACCTTAATC
ATCTACGTGGGTACCTCTCTTTTTTATCTTTCTTGTCCTTCTTCTTCTTGGGTTTGTAAA
CGATTTCCGGTTCCTGTTCCTCTTCCGGGCTGCTGGGCGCACTGCGTTTCGTCTTTTTGT
TTTTGTGCCGAATCACTTCTTCGTCGTCTGTGATGCCACCCTCCTCGGGAGACGGTGATT
TCGGAGCAGGAGAGTGCCTCCGATGCTTCTTCTTAGTTTTCTTGGGTTTCCGGCCCTCGT
CGGAGCTCCAAGTGCCGTGGCTCGGTGCCGGGGATGGCGACCGCGACGCTGATGCTGACC
GAGACAAAGAGGCAGAGTGAGAACGCTTCTTCTTCTTTGATCGTTTGGACTTCTTTGGTT
TTGGATGGTGATAGTGCATGCAGCTTTCTTCTTGTTCATGCTGATAATCCTTATAAATTC
TAATTCTGTCTTCTTCACTGGTGACGGCGGCAAACTCTGGCGCGTTCAAGTCAAGTTTCT
CCTTAACCTCGCTCCACGAGAGCAGGTGGTCGATGTTTGCATCACTCAATGCCCATTTAA
ATGCAGATTCTATTTTCTTTTGAGCTTTCGATTCTTCTTTCAATTTCTCCTTCTTTCTAG
TTTCAGCCTTCTCTAAAAGCGAATTGTAAGTAAGTTTGACATTTCCGGCGTCGAGCGAGG
CGGACTTGCTGTCCTCGCACACGACGGTGGCGAACTCCTCGAACGTGGTCTCCGGTTTAA
CTTCGAAATTCTTGTCTTTCAGTATCTCCTTTATTATCTTCTTTTCGTCGTGGAACCTCG
CTTTCAAATTTTCAACGTAAAACTTGAATAAGTCTAACGGTGTCGATCCGCTTTGTCCTA
ACATAGCTGAAAATCTCATGTCTGCAGAAATAACCGGATACAGCTCGACCCATAGAGACA
TCGATGTCAATTTACCTTCTTCATGAAGACTGTCCAGCAAAGCCAAAAAGTTGTCTCTAT
TTTTTCTTTGTTGTCTTTTATTCCTCTTTTTAATTTGTTCTCTTTCTTGTTGATATTCAG
CTTCTAAATTTCGTATGTGTTGTTCAAATACAATCAGGGCATCTTCCTTGTCCATACCTA
GTAAACTAACATCATTTTTAAAAGCTGAATTTTCTAGCAATAGTACTTGTGCCTCACTCC
ACGTACTACTGTACGTAATTTCGCTCATGTTCTCTAATACCTGGGTTAACATTTTCATGT
TCCGTTTCTTTAAAGCCTTTGCTTCTTCTTTTTCCCGTTTCGCTATAGTAAAAATACAAT
CTTCAAATATGTCCCTACGATCGGCTTCTGGAACACATCGCCAAATCTCTAGATTGCTGA
ACATTTCTTCACATTTGTAAAATTTTGTTAGAGATGTCACCCGTTCGCAACTCAACAAAA
ACTCTTCAAGATTCTCGCGATTTTTTTTTGTTTTCAGTCTCTGTTCCTCTCTTTCATCTT
TTAGTTTTTGAGTTTTGTAAGCATTGAACGCTTGTTTCTTTTCATTGAGTTTTTTAAAAG
TGACATATCGTGGATCTTTTGAAATAACTTTTACACATTGTTCCCATGTTGCATTTGAGG
GTATATTCTTATCTTTCAGGAGTTCTTTAAATGCTTCAATAGCTTCTTTCTTGTCTTTGT
ACAACATCTCAGGTTGTTCTTGAGTTTCATTATTAATTGAAACTGTGTCTTCTGGTTTTT
CGTCAGGTACAGGTATGGATGTGGCCAATGAGGTATCAATGGCTGCTAATGTTTTAGCCA
TAGCTTCGTCAAGGGCGGAGGAGCCTGCAGGCTCTGCCGGCAGCGGCACCTCACTCGGTG
TTACTTCCATCACAATGCGCTGAGCAGCTTCTTCAGCAGCAATTTTGTCTTTAATCTCCT
GTAATTCTTTCGGTACTACCCAACTGGACTCCTTTGTCTCAATATTATGATAGTAAAGTC
TGCCAGTATTTGTGGTATATTCTTTCCATACACAAGCAGATAATAGTTTCTCAGCTGACG
TTTTTAAGTCGTCAGGTTTTTCCCACAAGCTTTGTTTGGTTACAGAATTATAGTAATATG
TTCTTCCATCAGGGGCCTTATGTTCAGACCATGGACTACTTTGATTTGCCGATGGAGCAA
CATCTGGTGCAGGAGCATTTAATTCCGGTTTGAATGCAGGGAATCCTGGCGGTGGTATTG
AAAATGGAGGCGGCAACATGGGAGGAAAGCCCATGGGCGGTGGTAATGTAGCCATATTTG
GAGGTAACCCAGGCACTGGTGGCATTGCCACAGCGGGCGGCATTGGTGGAGGCATACCGC
TTAGCATTGGAGGCGGTAAAAGAGGAGGCGCGTTTAAGAGACCCGGAGAACTGGTCCCCG
CACTGGGTGGCTCCATGACTGAGCTACCAAATACTGTCGCTTTTTAAATTTTTTTTAAGT
AAGAACTAGACTTTATAAATCGTAAACTGTCGGCAACAAAATGTTATTATAGTTGGAAAG
GCACAAAATGAATTGTTGTAATGTATGTAATGGTAGTAGTTCAAATTAATAAAACGCA
(2758 bp)

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