SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp38264_c0_seq1
Scaffold_idBomo_Chr12
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_40_homolog_A_isoform_X2_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005685 C U1 snRNP
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007010 P cytoskeleton organization
GO:0008360 P regulation of cell shape
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016477 P cell migration
GO:0016607 C nuclear speck
GO:0032465 P regulation of cytokinesis
GO:0044822 F RNA binding
GO:0070064 F proline-rich region binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:3.02 TPM:2.39
ORF EntryO_BomoMG10542_complete:A_BomoMG_comp38264_c0_seq1
Sequence
(Nucleotide)
AAAAAAAAAAAGGCTTTTTTATAAATCGATTCACAAATATTTCTACAATGTACTGGTCAA
ATGTACAAAGCTGTTCCAAAGTTGCAATGTTCAGAGCGCTGATTACATACATACATGCTG
CGATGCGATGCATGCGAGCTGAGGCTCGGCGAGGCATAAGGCCCATACATGTAAAAAAAA
TTCTAAGGTCGCTTTTGTTGCCATATTTTCAAAATGAGATTCAATTCAAAATACAGAAAG
CACTATGAAAATCAACTCGAAATTAGGATCAGTTAGTTTGCTCCGTCTTCATTTTCGCAA
CGAATAGGGATTTTTTTCGATAAGGGTCTAGAAAACGGTTTCCTAGAAATTCTAACAAAT
TATAAAATTACACCTTCTCGTAAAAAGTTCCAGAAAAGAAACTATAACCAAAGAAGAAGA
TTTAAAACTGAAGAAAAAGAATGGACTTTCCTTATTGGAAGAGGCCTAGCAGATAGATGG
TGACTAAATATTAATTTGTATTATTCCCATATACTCTTTTAAGTGAGTTTTTCACAAAAC
TGTATTTTACCAACTGATTTCCATCCCAAAAATAGTTTAATCAATTTGTTTGATTTTTAA
TCATAGATTTGGAGCATGGTTATTAATCGTATCGAAGAAATCAATGTTAAAAAACAGGGT
CATTGCCTTATGTCATGTTTGCTGACACACGCAAGTCTTGTGGTGTTGCATGTTCATTTT
TGTTATCAAATTATCTGTTTCCATTAGTAGGTATTTTTACTCTAGTAAAAAGTAGATAAT
AACTATTATTATACTTACCATTTATGTCATATTATATTACATCTATATATCTACACTTTC
CATCTATAGTGTAAGAAAAATGTTCATCATATGTGATTGCATTGCACGACACAAATGACA
TTATTACATAATTTGGGTTATTTTACATTATTTCATATTGAATTTCTTTACTCCACATGA
ACTATAAATTATAATCTAAATATTTATACATTATAAACTCTTGCAATGGTTCCAAATGAA
ACATCTATGAATTAATTGGAAGGCAGGCAGGTAAACACAAAAGGTTAGAATTTTTTTATA
TAAATAATAATGATATATGTTTTACAATAAAATTTATATAAGTACTCTCCTAAGCTGTTA
GGCATTATAAACATTATAAACGTAAGACACGCGACTCGTCTTGTCACTGGCTAATCTATA
GGAAAACTTTATTGATTCATATCGTGCTAAACAGTACGACCGCAGAGATTACACACGAAT
GGCAGATTTACGAACGCGAAGCTTTCCGCGAGCCCGAGGCAAGTGGAAAAAGGATTGTCT
TTGGATTTCCAATCGAATAGTAAGTGATAGAGACATATTTCATATACGAATACCGTTTTA
TTTCATGTCGTTTCTTTTATACCGCCATCTTTAATTTTATTCTTGTTAAACAATAAATAG
AACTTTTAATGGTTTTTTTTTATTCAAGTTTAGCCTTACAGGAAAATAAAGCAACGCGCT
GTGACAGTATGAGCGAGGAAATATTATTTTAGTGTTGTTTTTGTTCCTCAAGCCCTTTTT
TCACTTGGCCCTTGTTTTGTGTGGTTGTTGACGAGGAGGAGGGTTGCGCTCGCGACTGTG
CGGGGTACTGGTTGAAGATGTGCACGTGTGTGACGCGACGTCAGTCCGCCTCGTGCTCGT
GCAGCTGAGCTAGCAGCGCCGCACGACGCGACTCCAGGTCGGCGTCACTCCACGCCGCAC
CCGACCTCTCTTTTTTATCTTTCTTGTCCTTCTTCTTCTTGGGTTTGTAAACGATTTCCG
GTTCCTGTTCCTCTTCCGGGCTGCTGGGCGCACTGCGTTTCGTCTTTTTGTTTTTGTGCC
GAATCACTTCTTCGTCGTCTGTGATGCCACCCTCCTCGGGAGACGGTGATTTCGGAGCAG
GAGAGTGCCTCCGATGCTTCTTCTTAGTTTTCTTGGGTTTCCGGCCCTCGTCGGAGCTCC
AAGTGCCGTGGCTCGGTGCCGGGGATGGCGACCGCGACGCTGATGCTGACCGAGACAAAG
AGGCAGAGTGAGAACGCTTCTTCTTCTTTGATCGTTTGGACTTCTTTGGTTTTGGATGGT
GATAGTGCATGCAGCTTTCTTCTTGTTCATGCTGATAATCCTTATAAATTCTAATTCTGT
CTTCTTCACTGGTGACGGCGGCAAACTCTGGCGCGTTCAAGTCAAGTTTCTCCTTAACCT
CGCTCCACGAGAGCAGGTGGTCGATGTTTGCATCACTCAATGCCCATTTAAATGCAGATT
CTATTTTCTTTTGAGCTTTCGATTCTTCTTTCAATTTCTCCTTCTTTCTAGTTTCAGCCT
TCTCTAAAAGCGAATTGTAAGTAAGTTTGACATTTCCGGCGTCGAGCGAGGCGGACTTGC
TGTCCTCGCACACGACGGTGGCGAACTCCTCGAACGTGGTCTCCGGTTTAACTTCGAAAT
TCTTGTCTTTCAGTATCTCCTTTATTATCTTCTTTTCGTCGTGGAACCTCGCTTTCAAAT
TTTCAACGTAAAACTTGAATAAGTCTAACGGTGTCGATCCGCTTTGTCCTAACATAGCTG
AAAATCTCATGTCTGCAGAAATAACCGGATACAGCTCGACCCATAGAGACATCGATGTCA
ATTTACCTTCTTCATGAAGACTGTCCAGCAAAGCCAAAAAGTTGTCTCTATTTTTTCTTT
GTTGTCTTTTATTCCTCTTTTTAATTTGTTCTCTTTCTTGTTGATATTCAGCTTCTAAAT
TTCGTATGTGTTGTTCAAATACAATCAGGGCATCTTCCTTGTCCATACCTAGTAAACTAA
CATCATTTTTAAAAGCTGAATTTTCTAGCAATAGTACTTGTGCCTCACTCCACGTACTAC
TGTACGTAATTTCGCTCATGTTCTCTAATACCTGGGTTAACATTTTCATGTTCCGTTTCT
TTAAAGCCTTTGCTTCTTCTTTTTCCCGTTTCGCTATAGTAAAAATACAATCTTCAAATA
TGTCCCTACGATCGGCTTCTGGAACACATCGCCAAATCTCTAGATTGCTGAACATTTCTT
CACATTTGTAAAATTTTGTTAGAGATGTCACCCGTTCGCAACTCAACAAAAACTCTTCAA
GATTCTCGCGATTTTTTTTTGTTTTCAGTCTCTGTTCCTCTCTTTCATCTTTTAGTTTTT
GAGTTTTGTAAGCATTGAACGCTTGTTTCTTTTCATTGAGTTTTTTAAAAGTGACATATC
GTGGATCTTTTGAAATAACTTTTACACATTGTTCCCATGTTGCATTTGAGGGTATATTCT
TATCTTTCAGGAGTTCTTTAAATGCTTCAATAGCTTCTTTCTTGTCTTTGTACAACATCT
CAGGTTGTTCTTGAGTTTCATTATTAATTGAAACTGTGTCTTCTGGTTTTTCGTCAGGTA
CAGGTATGGATGTGGCCAATGAGGTATCAATGGCTGCTAATGTTTTAGCCATAGCTTCGT
CAAGGGCGGAGGAGCCTGCAGGCTCTGCCGGCAGCGGCACCTCACTCGGTGTTACTTCCA
TCACAATGCGCTGAGCAGCTTCTTCAGCAGCAATTTTGTCTTTAATCTCCTGTAATTCTT
TCGGTACTACCCAACTGGACTCCTTTGTCTCAATATTATGATAGTAAAGTCTGCCAGTAT
TTGTGGTATATTCTTTCCATACACAAGCAGATAATAGTTTCTCAGCTGACGTTTTTAAGT
CGTCAGGTTTTTCCCACAAGCTTTGTTTGGTTACAGAATTATAGTAATATGTTCTTCCAT
CAGGGGCCTTATGTTCAGACCATGGACTACTTTGATTTGCCGATGGAGCAACATCTGGTG
CAGGAGCATTTAATTCCGGTTTGAATGCAGGGAATCCTGGCGGTGGTATTGAAAATGGAG
GCGGCAACATGGGAGGAAAGCCCATGGGCGGTGGTAATGTAGCCATATTTGGAGGTAACC
CAGGCACTGGTGGCATTGCCACAGCGGGCGGCATTGGTGGAGGCATACCGCTTAGCATTG
GAGGCGGTAAAAGAGGAGGCGCGTTTAAGAGACCCGGAGAACTGGTCCCCGCACTGGGTG
GCTCCATGACTGAGCTACCAAATACTGTCGCTTTTTAAATTTTTTTTAAGTAAGAACTAG
ACTTTATAAATCGTAAACTGTCGGCAACAAAATGTTATTATAGTTGGAAAGGCACAAAAT
GAATTGTTGTAATGTATGTAATGGTAGTAGTTCAAATTAATAAAACGCA
(4249 bp)

- SilkBase 1999-2023 -