SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp38208_c0_seq1
Scaffold_idBomo_Chr12
NCBI non-redundant
(nr)		Synaptojanin_[Operophtera_brumata]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004438 F phosphatidylinositol-3-phosphatase activity
GO:0004439 F phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0004445 F inositol-polyphosphate 5-phosphatase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005874 C microtubule
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0006796 P phosphate-containing compound metabolic process
GO:0006836 P neurotransmitter transport
GO:0006897 P endocytosis
GO:0007612 P learning
GO:0016082 P synaptic vesicle priming
GO:0016191 P synaptic vesicle uncoating
GO:0016787 F hydrolase activity
GO:0030117 C membrane coat
GO:0030132 C clathrin coat of coated pit
GO:0034595 F phosphatidylinositol phosphate 5-phosphatase activity
GO:0034596 F phosphatidylinositol phosphate 4-phosphatase activity
GO:0036092 P phosphatidylinositol-3-phosphate biosynthetic process
GO:0042578 F phosphoric ester hydrolase activity
GO:0043647 P inositol phosphate metabolic process
GO:0043812 F phosphatidylinositol-4-phosphate phosphatase activity
GO:0043813 F phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity
GO:0046488 P phosphatidylinositol metabolic process
GO:0046855 P inositol phosphate dephosphorylation
GO:0046856 P phosphatidylinositol dephosphorylation
GO:0048488 P synaptic vesicle endocytosis
GO:0048489 P synaptic vesicle transport
GO:0052629 F phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity
GO:0052658 F inositol-1,4,5-trisphosphate 5-phosphatase activity
GO:0052659 F inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity
GO:0097060 C synaptic membrane
GO:0098793 C presynapse
GO:1901632 P regulation of synaptic vesicle membrane organization
GO:1903390 P positive regulation of synaptic vesicle uncoating
GO:1904980 P positive regulation of endosome organization
Transcript
Level		FPKM:3.26 TPM:2.58
ORF EntryO_BomoMG10462_5prime_partial:A_BomoMG_comp38208_c0_seq1
Sequence
(Nucleotide)
TTTTAATCTTTTCTGGTTCTAAGGGCTAAGATATGACAATGAGCCATTATGCAAGTTATA
TTTTCGATTTTCTTAATTTTAAGAGGAAACATTAATTTAAGTAAATTAAATGCCTAACAC
AGCCAAATGAAGTAATATAACATATTTTAACAATAAGACTGAATTATCGAAATTTGTCTT
GAGACAATGTGGAAACAATTTAACATCTACCTCGGAAATTCTAAAAACCTGAAAATTAAT
AAAACATACGAAGTTTTTCATTGGATCATCCTAATTTTTCTATTCTTTTTATTCTTTTAT
AAGTACAATAATTAAATATTGAAATTAAGTAGGTAGTGTTAATTTTGATTTTATTGCAAA
ACCCTTCAGTTTAGATTCAACAATAATTAATGACCAGCCCAAACTTAAAGTTAATAAATT
GTAAATACATAACATAGTGAAAGCTTGCTTTATATTGCACATGCCTTTTTAACATTGAAA
ATACTTAAGGACTTGCGCCATTTAGACTATAATATATATAACTGCTAGTAAAAAAAACTT
GCAGATTTAACATAATTTTACAAATAACACTACAGCATAGAACCACAACATTTAAATAAA
TTTAGCTATAATCATGTAGCTATTATAAATTCTACAGTGTATTACATAGTATTAATGCGT
TGTTTTTGTCAAAAACATCCCTTGTCAGGTCTGTTTAATTCGTAGGACGCGGCCGCGCAG
GTAAGGGTGGCGGAGCACCTTGTCTAGCAGGCACAGGAGGCGGAGGTCCAAGTGGCGGCG
GTGAACTTGGTTCCGGTGGGGGAGGAGGTGCACAACTAGGTGGCGGAACACTGTCGGCGG
GCGGGGAAACAATGGGGGGCTGTCCCACAACTTTACTAGTTTCAGGAGACAAAGGTGCAG
GTCTTGGGGGTGGAGGTCGTGCAGGACTCACTGCTGGTAATCTCGATAGAACCAATGGTG
TTGGTGAAGGAGCTGGGGGTCTGCTCGGCTGTTGCTTTCTAGGAGTAGGTGGAGCAGATC
TCAGTGGTCTTTCAGATTGAATTTCACCATATAAAGGTATTGTGTTGTTTGTACACAAAC
CAATTTCTGTGCGAACAATATTAACCCAGTTTGGAGATTTCAAGAAAATTTGCAATGGAA
CTGTACAAACTGATAAAGTTGCTTTTTGAGCTGCTGCTAAAGCATTTTGACCCTCTCTGA
AAGTGATGCTCAAAGTGTGTTCATCTATAAAACGAACTAAGGTTACTTCACCAAAAGTAG
CTAACTCTTGGAGTACAGCAGCCATGACATTATCATCAAATACAGACTCGTCAGTATTAA
GGTCTTGTAATGGTTGCACAATTATACAAGCATCAGGAGGACCCAGATCTTTTACTACTT
CATAAAAAACTTCCATGCATTTTGTATAGCTGACCTGTAACACTTCTATTTCTAATATTG
CTATTACAGGTCTGTGGTCACTTTGTTTCAATTCTGCCCTTCCATAGTGTAGAAGTTTCC
CTGCTGATAATTCTGATGTGGTTTCAGGATCAATAGTATATTTTCTGCTTCTCCACAATA
CACGGTCAGTCCATGCTGGTGCTCTGCATTTTTCACTGGTATCATAATCATCACTAAATA
GATCATATTTATAAGTTGGAGGAAATGTAATTTCTCCTTCAAAGCAGTTTTTGAAAACTA
AATCTTGTGACTTTTGCTGTAAAAGTTGATCTTGCTCCAAAAGCCTTTGCAAATTATTTT
GTGAAGCCAAAAGGCGTACTTCATCTTTATCTAAATCTATACGATAATTAAAATCACCAC
ACCAAAATACATAGTCATGGGAGTACAGAGAGCGACCCATGGGAAATGCAATTTTTCTAG
TAATTTCTGTGTAATCAGCATTACGCTCTGTAACTTGTGATTGACCAGCAGCAAAATGTG
CACAAACAAAACATAGTGAGGTTCCATAAATTACCATTCTTATTCCCACAGCACCTTTAT
TCCCAGTAGCCCCTCCAAGTCCAGTCTTAACTGAATCAAGTGCTACATCTCTGATATGCG
GTATTAAATCTTTTCTAACAAATATGAATAAACATACTCCAACAAGTTGATGACTAGACA
GAAGTGTATAAGATGCATCTCTGCCTAACACTTTTTCCAGTTCCTCACTCCATGCTTTTG
CATTATCAGTACTAGCTGCCATAATATTACTAGCATTTAAATCAACTATTTCTTCAAAGC
CTATTGCAAATATGTCAGAAGGATGATCCTTCAGATTGACTGTATTTACCAAAGATGAAT
TTGGACAATCTAATAACCAGTCAGATAATGAAACATCCTTATAAGCAAGACTTCTGAAAT
GTTTACCACCATTCACATTGTATGTGCCAATAGTTATTCTAAGAGTTGAAGGTTGAGTGA
ATTCATTCGTTCTACGACACATTTCCCTCAAGATAGCTGTAGAAGTGTGTAGTATGTTAG
ATGGCAACAGTATTCTTGTGCGGTCTGCCAGTTCAGAGTTTAATGTTGAACCAAGTAATA
AAATATCAATTGCTTCTTGCTTTGAGTTGTCTAATAAATTGTTCTGGATAGTCCTGGCAG
CAGATCGAGCTCCATCAATTAGTTTGGAGCCTCCTTGAATTGCACCAGTTCCAGCATAAA
TTTTAGATATTTCATTTCCATTATTCACCCACATCTGTTTGTAAACTTCTTCAAATCTAT
TAACATTTTGTTTTTTATCAAGACATTGTAGTAGCATTAATTGAACAGCA
(2750 bp)

- SilkBase 1999-2023 -