SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp19877_c0_seq2
Scaffold_idBomo_Chr8
NCBI non-redundant
(nr)		mRNA-decapping_enzyme_1A_[Papilio_xuthus]
Ontology
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0008047 F enzyme activator activity
GO:0008134 F transcription factor binding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030234 F enzyme regulator activity
GO:0031087 P deadenylation-independent decapping of nuclear-transcribed mRNA
GO:0042802 F identical protein binding
GO:0043085 P positive regulation of catalytic activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0045893 P positive regulation of transcription, DNA-templated
GO:1903608 P protein localization to cytoplasmic stress granule
Transcript
Level		FPKM:2.16 TPM:1.71
ORF EntryO_BomoMG1114_complete:A_BomoMG_comp19877_c0_seq2
Sequence
(Nucleotide)
AAACATTACTTAAACAGAAATATAGTAAACTGATTCCTATATGTAACATAAGGCATATTT
TATAAACGAATAGAAAATATTTTTTACAGTCCATAAAAACACCTATCAAGTAATGTTGCA
GCTTGGCAAGTCTCTTATATTTTGAAAATTACAATTGCAACAACACGTAAAGCTGAATAT
CTCTACGAGATTTAATATATTTTAGAAAAGTGTATACTTTGTTATGTATTGTCCGTTTTT
TTGTGATAAGAAGAACATTAAAAGTATGATGGATGTGTAAGAACAGTAACTGGATGTTGG
ATGAGTTTGATTTTACAGAACATCAAGCTGAAGCCAATTAGCTTGTAACTAAAAATATCA
CAAACATTTGTGTCATTAAAGACCTGACTGAATATCACTCATCTGGAGTCACTAAAATTC
ATCCACTATATAAAATTAAGTGACAACTGGTTTGCATATTTTTAAACTTATTTAAAATAC
TCTGTCCAAATGGTAAGTCACTAAAAAACAACAAGTTCTACACAACATTTTTAAAGAGAT
TATGCTTCATATTACAACTGTACATCATAATAATGGCTGGCAACATCAGCCACAGTCATA
AAAGATTATCTTATGACACAGAAAATGCTTTTTCTGAAAACGATTTGACATAGGCTTCGT
GAAGTTTATTCACAAAATCTGCATCATGTTTGAGTAAGTAATTAAAGGCCTGAAGGAGTT
GATTCCTGGTGAGTGGCTGCGGTGATGGCTGGACATCACCACCTGAACTTGCAGTGAACA
TTGTGGGGGGCATCAGCGCCGGTTTCTGCTGAGTAGTTACAGAGTCAATCTTAGGATAAG
AATGTCCAACATCCTCCACTTTGCTACCATAATAAGAACTTACCGTGTGTCCTATGTCTT
GAGATTGATTCAAGTATGCAGCTAATGGCGATGTTGTCTTGGGAGAAGATAAGTGCATCA
AATTGAGTTCATTCTCCATGGTGACTATTCCATTAGCATCACTACTATCCAGAGCTTTTT
TCAATCCTGGTATCCTTTGATTTTGCTTCTCCAAAGGAGTTGACTTTAATGAGAACATAC
AATTTGGTTTGATACCAGAATCTAGTGTAGAATTACCATTTGAGCTTTGCCCTTCTTGAG
GAGTAACAGATCGCTGTTGCTTCTCAATATGTTCTACTGAATGTGCAGGGTTACTCATGA
GCCTCTGTAAAAGCTGTGGTACTTCTCTGGAATCAGTGGCACGCGGACCGAATATCCCTG
GTGAGGGCAATGAAGACACTGCAGGCATTTGAGCCGATGCTCCACTCCCAGCCTTTGCAA
AGAAATCCATTACACTTTGCGACGTCATGTCAGGCGCTTTGGCCGGCGTCGATTCGGATT
TGTTTCCAGCAACACCTTTATTAGAATTGAAATCGTCTTGCGCTTTACTCAACATGCTGA
AGATATCTATAGATTGAGTTGAAGTTGTAGACGAATTGTAAACTGAATTCTGTGGCATGG
TTTCGCCTTGCGACTGTTTTATGGACTCTTTCACTAATGTGTTCAACTTCGTGGCCACTC
GCACGCACTCGTCCTTATCATAAAACCATATACCGTAAATGCGGCACTTGGCGTTACGAT
ATAGTAAAAACGGCTCCTTTAACTGTAGTTCAATTCCTTTAGACACTGGTTCTATTAGGT
TGTTAGTGTTCAGCCTGTTCATAATCACTAAACTGTGGTATGGTTCACCATTTCTACTGT
ACACAAACAAAGCACCCTCAATGTTGGTTTTCTCCCATTCGTTCTCTTCAAATGTGTAAA
GGGCAACGTGGGTAGCACTATCGACAATTTCACGAGCATATGGATCTGCCCGCTTTAATG
CAGCGAAATTCATACTACGTAACCCGGTGTCAGCCATTTTTTATATTACTAATAATAAAA
TAGTTTTGAT
(1930 bp)

- SilkBase 1999-2023 -