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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN33792_c3_g4_i4
Scaffold_idBomo_Chr14
NCBI non-redundant
(nr)		retroelement_polyprotein_[Glyptapanteles_flavicoxis]
Ontology
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:1.30 TPM:0.72
ORF EntryO_BomoIG10247_complete:A_BomoIG_DN33792_c3_g4_i4
Sequence
(Nucleotide)
GTGGTGCGTTTACGCTGTGGATGTCTATGGGTTCCAGTAACCACTTAACACAAGGTGGGC
TGTGAGTTCGTCCACACATTAATACGAAGAGCATAATCAAACGAAATTAGATACGAAGCT
TAAAGGGCCGTTTAAAGTAGTTGAAGTATTGGATGGTGTCGATTTAATTTTGACTCTCAC
ACATTCGCTTAAGGCTCGAGCTACTACTTGCCTCACAAAAATACAGCCTGCAAAACCTGA
ACAACCTCCTCATCCGTGGGCGCCCGGCTCTCGCCTGCAAGTCGGCTGTTACGTGTTCGG
TGATGCGAGCCATGTAGCTTCTGGGTGTTCCATGCGCTACAAGAAGAAAAACGACACTGC
TCCAGGTGCTGTGGCAGGTCCAACCAGAGACGTCAACGTGTGTTCCAGAGCTTCACACGG
TGTGTTACAGATAAGTGGTGTTGATTTCCCCTTTATGTTTGATTCAGGGTCAGAATGCAG
TCTCATAAAACAAAGCCACAGTAATTTACTCATTGGCAAGCGGTTTCATGAACAAGTCAC
TTTGAGAGGTGTAGGTAGTAATAATATCGCGTCTACGTTACAAATTAAGTGCCCCACTAG
TGTACAAGATCTGAGGTTTGATGTGTTGTATCACGTTTTGCCAGACAAAAATCTCACTGA
AAGCGTATTGTTAGGTCGTGATATTTTAGAGGCAGGATTATCCGTAAAAATCAGTGACGG
AAAATTAACTTTTGCTAAAACCAAAACCTCCAACTCTTGTTCAAAGTCGGAAATTTGTGA
CTTAAATATGATAGACACCGATTTGGTAAATGAGAATAGGGATCGTTTAATTAGAATACT
CAAGAAATATTCAGGTTCTTTTATTCAGAAGCTACCAACCGCGCGTATTAAAACTGCTGA
GCTGAAAATTGATCTTATAGACCCTACTAAGATTGTTCATAGAAGACCTTATCGGTTATC
CCCAACTGAACTGAAAATCGTTAATGAAAAGGTTAATGAAATGTTAGTTGCCAATATAAT
TAGAGAAAGTTGCTCGCCATTTGCAAGCCCTATCTTATTAGTAAGAAAGAAAGATGGAGG
TGATCGTATGTGTGTGGATTACAGAGAGCTTAATAGTAACACGCGCCCTGATAGTTACCC
TCTTCCCTTAATCAATGACCAGATAGACAAACTACACGGAGCCCGATTTTACTGTAGTAT
CGATATGGCCTCTGGTTTCCACCAACTGAAAGTCCATAAAGACTCCATAGAGAAAACTGC
CTTCGTTACACCAACAGGCCAATACGAATTTTTGACTATGCCCTTTGGTCTTCGAAATGC
TCCACAAGTTTTCCAAAGAGCAATCAACGCAGTATTGAAACCGCTTAACGATGATAAAAT
TTTGATTTATATGGATGATGTGTTATCTGCGTCAGAAACTATTGATGAGGGGCTATCACG
CCTTGACAAATTGTTAAAAGCCTTATCCAACTCCGGGTTTTCATTCAATTTTAAAAAATG
TTTTTTATGAAACAGAAGGTCGAATACTTGGGTTACGTAATCTCATCAGGGGAGGTCAGG
CCAAACCCGCGTAAAATTGAAGCTCTTCGAAATGTCCCGAAACCTACCACTGTAAAACAA
GTCAGACAATTAATCGGCTTGGCAACCTATTTTCGTCAGTTTATCCCAAACTTCTCAAAT
TTATTGAAACCTCTATACCCTTTAACATCAGGAAAAGGTACTATCTCATGGACTACAGAG
CATGACAAAATTCACACTAAAATTGTCAATTATCTTACATCTGAACCCGTGTTAAGGATA
TTTGACCCTTCTCTACCTATCGAGCTACATACTGATGCAAGTAGTGAGGGGTATGGCGCA
GTCTTAATCCAAAAAGTCGATAACCTCCCTCACGTCGTTGCTTACTTTAGTCACCGGACG
TCTGACGCAGAGAGCCGCTATCATTCGTATGAATTGGAAACGTTGGCAGTGGTCAAATCT
GTGGAGCATTTCCGTCATTATCTTTATGGCCGAAAATTTACTGTGTTTACTGATTGTAAT
GCCTTAAAAGCCTCCCATTCAAAAAAAGACCTAACACCTAGGGTTCACAGGTGGTGGGCA
ATTTTGCAATCTTACGATTTTTCCATCGTGTATAAGGAAGAAAAGAATATGGCTCATGCT
GATTTTTTGTCGCGAAACTCCCTTATTAGTCAAAACGGTGCTAAGGAAAAAATTGTAAAT
TTTTCCGAGCTTGAAAGGGGGTGGCTCTCTATAGAGCAACAACGTGATTCCGAAATTTCA
GATCTAATTGTTAAGGCTAAATCCAACGAATTACCTCCTGAAATCTCGCACACATACGAT
GTTAGACAAGGTATACTGTATAGAAAAATAGAACGTGGAAAAACTACCAAGTGGCTACCT
ATATTGCCTCGATCTTTGATCTGGTCTCTTATAAGCCACGTGCATACTGAAATAAAACAT
CTAGGGTACGAAAAAACGCTCGACAAACTGTATGAACTTTATTGGTTTCAAAATATGGCT
AAATATGTAAAGAAATTCGTAGATTCTTGTGTGATATGTAAATCTTCAAAAGGCCCATCG
GGCGCTCAACAGGTACGTTTGCATCCAATCCCAAAAATAGCTGTTCCGTGGCATACCGTG
CACATAGACCTTACCGGAAAGTTAAGCGGTAAAAGTGATCAGAAGGAATATTGCTCTGTC
CTCATTGATGCCTTTACAAAGTACGTATTGCTAAAACATACATTGAATTTAAACTCTGCC
AACGCAATAAAATCAGTCAAAGATGCCGTTCATCTATTTGGCGCTCCGAAACGAATCATA
GCTGACCGAGGGCGTTCATATGATAACACAGGATTTAAAGACTTCTGTAAAGATAGCAAT
ATAGAATTGCATCTAATCGCTACGGGTACCAGCAGGGCTAACGGACAGGTTGAGCGCGTT
ATGCGAACTTTGAAGAGCCTTCTCACAATAGCTGAAACTAACTCAGACCAATCATGGCAA
GAGCAGTTAGGAGATATTCAACTCGCCCTTAATAGTACACGTTGTCGAGTAACAGGGTTC
ACTCCAATAGAATTAATGTTTGGCGTTCAAGGTAGCTCACTTGAAATCTCTAAAGTTACA
ACAGACTCTGACAATCCCTCTAGATTAGATCTTGATTTAGCACGGTC
(3167 bp)

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