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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN33775_c1_g3_i4
Scaffold_idBomo_Chr24
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_SDIR1-like_isoform_X1_[Papilio_polytes]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0038018 P Wnt receptor catabolic process
GO:0046872 F metal ion binding
GO:0072089 P stem cell proliferation
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:2000051 P negative regulation of non-canonical Wnt signaling pathway
Transcript
Level		FPKM:1.15 TPM:0.64
ORF EntryO_BomoIG10497_complete:A_BomoIG_DN33775_c1_g3_i4
Sequence
(Nucleotide)
TAATTAGTTGTTTTCTTTGTCAGGATTTCAAAATAATGAGGGAGGAGTGCAGTGTTTGTT
ATGTACTTCGTATATCGCGACCCGCTCCGCTCACATTAGTAATAAACCAGCTGTTATTAC
GTACGGTCGTTTCATTGCCCCTAAGTTCCGAACTGGAATTACCCACAAGTGCACATTATA
CATTAAAAAAAATATATATAGCTCAACTTATGGGAAACATATTTATCTGTGTTTGATTAT
AAAACCCAAGAAACAACCGTATTTTGCCGCCATTTTTTTTTCTTTCTTTCTCGGCTCCTA
CTGTTTTCGCCGTATCGTCAACAGATGGCGTAAGGTGGCGAAAAGAACTAACACGAAAAG
GAAGTACCAACAAATACGACTTATCCAAAAAATAAAAAGTGTCTCAATGATTTATAATAT
AATTTTACTTGACAGTAAACACAAGCGTGTACACGTAAGTATTATTTTGCGAACAAAATT
ATTTTTCCGCTGCACTATGTTCTGCTACTATCTTCGCCGATTCGCGCCTTGAGCTCCGTG
CGGTGGGGGAACCTCCCTTTCTTGCCACCAAGTAAAGAGAAATGTTCCGACCGCCACAAC
CGCCATCGCGCCTAGTGCTAAAGCATTAGCAGCGGATGTGTTGCTGCCCTGCGAATTAGA
ATTCTTGGTCATCGCAAAATGGCAATTTATTTGTGGCAACGAAAAACGACAATGATTGTG
ATGGAACACTTTGCACGGTACAGATTGAAAACGAGACAAAACTAGCTTGCCGTTTCACAA
TTCACTGTCATTCGCCGCCATAATTTGTTGTCTGACTGAAAGGAATTTACGTAATTCCCC
GAACAAAATATACGTTTGCGCGTTCCGTTTATGTTTTTAATATATCACTATGCGCATACC
TAATTTTATTTCTTGAAAACAATAAGTTTCGTATGTGGCAAATAAAAATCTAAAACAAAG
TGAAATAGATAATTGACATGTTGATGAAATGACATGTAAAAACGTATTCTTGTATTTTGA
AAAATTATATTGAAATAATTATTTTCTTCGTATAAAGAAACTTCCGTTCAACCGGATGGG
GATTATCTGTGAACTATCTCGAGAAAAACCAGATTCAAATGAATGTTCAAGGCTACTGCG
TAAAACTACTATTTACACTTATTTTATATATTATATCATAAATCTGACTCTAATAAGTTT
TATTTAATTAAATGAAGCCTTCCCAACGTTTTGTTTATTGGATTCATATACAAATAGCAG
TGCCAAATTTTCAAATCGATAATCTCGATTCTATACTAACGTACGAGCACATCACTAAAC
CACAAAAAATTACTGTAATTCTAGCATCACATCGACCTATCTCTCTCCCACAGCGCCAAA
ATAGACAGAGATAAAGATAATGCTAATTAAAAGACATTTCATGTCATCAAATCTGGATCA
ATGTATAGTTACATCAAAACATAAATATTTTCGTTGACTTGGTATTTTTTAATTTCGATT
ATTTTTAATTAATAATGAGTGTACGCGAGGAAGACAGGCAGAAAACGGGATGCACTGGTC
GCGGCCTTGGGATCGCGGCCGCGGTCGGTGTCGGCGTTGGTGCTGCTTTGTATTACTTCT
TAAGCAAAAGGCCTGAGCAACCCGATACTGAGGGTTCCACCAGTTCTGCGTGGGCATACA
ACGATCACAGTGCTTTAGCGGAAGACAGCCAGATAAATAGGCTCAGGGATGAGCACTTCC
GTAAGCGCTCGTGGTCGTTGGAAGAATGCTCCATCTGCTTCGAGATCATGCTGAAGGATC
AGGAGCTGATGGCCCTACCGTGCACCCACAATTTTCACTCGCAGTGCATCATGCCCTGGC
TTCAGGAGAAACAGACGTGCCCCAATTGCCGGAAGGACGCCTGATCGAAGGTGATAAAGG
AAGTAAAAAGCGCTGACTGGATCAATGTTTTTTTTGTTATTGTATGTGAGACGTTAGTTC
CCGGCTCGGTAGTTTGTTTTAGCCGGTTATCGTCGCGAC
(2019 bp)

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