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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN33774_c0_g2_i4
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		hypothetical_protein_2_-_silkworm_transposon_mag
Ontology
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:2.47 TPM:1.37
ORF EntryO_BomoIG10827_5prime_partial:A_BomoIG_DN33774_c0_g2_i4
Sequence
(Nucleotide)
GCCACACCCAAATAACGTGACAGAATTAAAATCTTTCATCGGTATGGTAAACTTCTATTC
GAAGTTCATACAAGATTTGAGTGCACATTTATCACCTTTATATGCCCTTTTAAAAAAAGG
TAAGCACTGGATGTGGGGAAATGAACAGAATGCTGCTTTCCTGAATGTTAAAAAGTTTTT
GTGTAGTACAAAAGCACTCGCACATTTTGATATGTCTTTGGAGTCGGTGTTGACTGTGGA
TGCGAGCGCGCGTGGTCTGGGTGCCGTGTTGGCGCAGCGCGGGCCAGGATGTCAGGAGCG
CGTCGTTGCATACGCTTCACGCGCACTCACCACTCATGAATTACACTACAGTCAGATTCA
TAAGGAAGCATTGGCGATTGTTTTCGCGGTGGAAAAATTCCATCAATACTTATATGGGAG
AAAGTTCATACTACGGACCGACCACAAACCTCTGGTGAGCATTTTCGGGCCTAACATAGG
TATCCCGAGCGCGGCAGCTAGCCGCTTGCAGCGCTGGGCTATCAAACTATCAGCATATGA
CTTTGAAATCGAGTACGTTAGGACAGATAAAAATGTAGCCGATGCACTTTCACGGTTAAT
CGAGTCTCAAAAAAATGACGTAGCTTCCGAGGAAACAGACTTACCCGAGCAAACCTACTT
ACACTTCTCAACAGAAGCTCTGTTAATAGATTATAATGTTCTTAAAAAACAAACTAGTAG
TGATCCAATCTTAAGTCGCGTGTTAAGTTATATAAGGGACGGATGGCCCTTAGACATAGA
AATTAATGAATTAAAACCATATTATAATAGGAAAAACGAACTTTATATTGAATTAGGATG
TATAATGTGGGGTCATCGTGTGGTTATACCCTCTTCATGCAGAAACAAAATAATAACGGA
GCTTCATGATCCGCATATGGGCATAGTGAAAACAAAATCGCTAGCACGTAGTTACGTTTG
GTGGCCGGGAATCGACGAAGCGCTCGAGACGGAATGTCGCGCTTGCACCGTGTGTGCTGC
CGTCGCAGACGCACCTTCTACACACGCGCCCCGCTCGTGGCCCTGGCCCTCACGCCCCTG
GTCCAGGTTACACTTAGACTTCTTAGGCCCCATAGGTGGAGTCACTTATCTAGTTGTAGT
GGATTCATGCTCCAAATGGATAGAGGCAATTAAAATGCAGAGGACAACGGCACAAGCGGT
TATATCGGTACTGCGGGACTTGTGGTCAAAATTCGGCCTGCCAAAGCAAACGGTCAGTGA
CAATGGACCGCCTTTCTCGAGCTCTGATTTTCAGAAGTTTCTGATTCATAATGGCATAAA
ACATATTTATTCAGCTCCCTATCATCCCGCCTCTAATGGGGCCGCTGAAAATGCAGTTAA
AATTTGTAAACGTGCGATTAAAAAGGCATTAAAACAGAATTTAAACGTAGATACAGCTCT
GTGTAGATTTTTATTAGCCTACAGAAATACAGAACATGCAACTACCGGCGATAGTCCAGC
CAATATATTACAGGGTCGAAGTCTCCGTATGAGATTAGATAATTTAAAACCAGAAAGGCA
ATCTCGAGTTATCGCGCAACAAGAGCGGAGCGAGCAAAACGCAGGGGGTGTGCAGCGACA
ACTCGAGCCGGGCACTAAGGTGTGGTATCGGGATTATCGAGGTCTGGATAAATGGGTACC
TGGGACGATCCTCAAGCAATTAGGTAGTCGTGATTACTGTGTACGATCTAGTTTTGGAAC
CGAGAATCATAGGCACGTCGATCAGCTAAAATTAAGGGTTACAAAAAATATAGATAAAGT
TGATACCTTTGCGTCGATTCGTAAAAATATAAGTCCCGAACTGATCGCGCAAAATTTAGA
CTTAAGAACACAATCACGTAAGTCGCTATCATTTCCCATGACAAGTGGCGAGGAACCAGT
GGCGGTGGTCAACGATTCGGGGAAGAGTAGTTCACCACCAAAAAATAGCACACCGGCACA
GGATGCTGTATCGCCTATTCGTGGCAGCCCTATGAGACCCGCTGTGCCGATAGACAAGGC
AGCATGTAGTACTGGTGGTAAGAGTATCAATGAAAATGTGACACCCAAACGTGAACGTCC
TGTAAGAATACGCAAGCCACCAGTTAGATATGGATTCGAGGAAATAGATTAAGTATATAG
TTATAACCTCTCTTTGTTTTTTTTTACTTTAGTTTGTTATGTACGCTTAGTTAAGATATA
TATATATATATATAAATAAATATTCCACTCCGTTTGCGTGTTTCGGTGAGTACTCTTCCT
AGTGTATGACCGAACGCGGAAGAGCCAATTGCAGCTACATGGCGAAAGTACTGGTGGGTG
ACGGAAGACCACGGTCCTCGACCCACGCTGACTCCTAACAAGCAGAATATCTCGGTTGTT
GAGCGAAATAAAAAATTTTAGTCGCCTCAATTTTTATATGCCCGCCTACTTCCCCAACGT
ATATAGGAGTACAACGAGTTGTTACCATAATAATCTGTATGTCAGCGCACGCTCGAGGCA
CTGGTGCCTGTGCTGGAGGCATGGTCGGACCGGCGAC
(2557 bp)

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