SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN33727_c2_g5_i5
Scaffold_idBomo_Chr17
NCBI non-redundant
(nr)		ubiquitin_carboxyl-terminal_hydrolase_nonstop_[Bombyx_mori]
Ontology
GO:0000124 C SAGA complex
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007411 P axon guidance
GO:0007412 P axon target recognition
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0008347 P glial cell migration
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0021782 P glial cell development
GO:0036459 F thiol-dependent deubiquitinase
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0071819 C DUBm complex
Transcript
Level		FPKM:5.47 TPM:3.04
ORF EntryO_BomoIG10285_complete:A_BomoIG_DN33727_c2_g5_i5
Sequence
(Nucleotide)
TATTTTTTTACAATAAACAAATTTTTCCTTCTATCTTTTTTTTTATTTGTTGACCCTACC
ATCTGTCACTGCAGGTACATACACGCCATTTTCGATTCGTTTCTTTATTGGCGCGGCTTA
TATCTATGCAAGACCTTAATTACTTCTTTGTACATTTTGTCTCTATACACCGTTGTGCTC
TACACACGAGCTGATTAAAGATCACACCAGTTCTAGCGGCGCTCACATTACACTATATTT
CCAGTTTAAGCCAGATACACAAAAAAAAAAAAAATTAATGTGCCTTCTTGGCGTTATGGA
ACATAGCAATAATGCGTAGTATATGAGCCACAATAAAACACTTAAATTATTTACTATTCA
GGAAATGAATCAAATACTAGAAACTAATAGTGAAGTTATCATAATGTTATACGGGTAAAA
TTAATTTCATTAAAACGAAGCAACACTCACATGTGATTTAAAAACAATACAGGCTTCCAA
TCAAATGCCATAAATGATAAAACAGCGAGGTAGATTGAATTGTTTGTTCGCACAACAAAT
TAGGAATGATACGCTCTCCGCGTCAAATACACACACACATGAACCTTATCACTAATAACA
CTTCAATTGAACAACATTTAAATACATTTATTGAACAGGTAAGGTTATGCAGAAAATGTT
TTTACTACTGTTACTTTAAAAACCATAGGTGCCTATGACTGTTTTAAGCTGCTTTAAACG
CAACAGGAAGCTAAATTTATTTAAGATTCATAAAAGATTTGTTCCTCGTAACGGCAGATA
AATATCTTGCTGTTAGCAAATAATTTTCAGTCACTACATAAATTACGTACGTTTAGATTA
AAGCTTACAAACTAACAAATTCGTAAATAATTTTGCAGGGCAAAATTAAATATAAGGATT
ATCGAGACTTTTTATCATCTATGTACTAATATCACTAGAAAATATGACTTTTTTTTCTTA
CATAATGTCCAAAAAGTTATACGTTTCCCTTCGTACAATAACGTCAAAGAAACGATGGAT
ACACTGCGTAACCATCAGACAGATACATGATTTAGAATAATAGTAATAATAAGCTCCCTA
ACAAAAGCTTTTAAGAAACGTCGCATTCATACTCCAACACAGTCTTGTGATAAAACAGAA
GATATCCTTCGCTATCTAAAACCTCTCGAAGTGACGCCCTAGTAATCATGTGGTCGTCGC
ATTTGAACCAGCTTCCTTTCATTTGCCTGACGTATGCGGTGTAGTGCCCTGCGTCCAGCG
AACCCAAGTGATTGACCACCGCGAACAGAGAGTAGCGGTTGTCCTCGAACATTCCTTCCG
GGGTGTTATTGTTCTCGGCCGCGCCCACGTCGACGGCACGACGATGCGACGACATAAACG
GAGTCATGTCTAACTCAGCCGGGAACGATACGAAGGCGGATATCTTCCGATCGATCTGAG
ACGAATGCTCGAAACGTTTGAGGTGGAAGCTCGCTACGATCGGCAAAGTCTCTAAAGTCA
GCTGCTTGGTGGATTCACGGTAGGCGCGACAGTTGGAGCATTTTATTTTCGCCGCCGAGC
CCAGGTGTTCGGCTCTGGTGAAACGTTCCAAGCAAGCTTGCAGGGAACCCGGCCCGGCCA
CGTCAAGACTGATGTCCCAGAACGGATCGATGGTAGTGGAGACTCCAGAGCAGGAGGTGC
ACACGACGTCGCTTTGTAATCCGCCGGTGAATATCTGATCGATAATGCAATTACAACGCC
CATTTTCCTTTTTTTCTGTATCTTCTACTCCATTCATGCAATGTCTATGCAGCACATCAA
GAGTGGCAATGAAGAATTCATGAGCATCCTGTTGTTCATATCCAGCCAAGTGACGGGCGT
GAGTCCATATTAAGTGTAATAGACGATGCAAAGTCAGCGGTGTTTTTGCTCCAGAGTAAA
ACTCCTGAAATAGTTTGGAAACTTCACACACCAAGCATTTGCTAGAACTTTGCGACTTAC
ATTTGTGTTTTTCTGCTAAGAAATAATCTCTCAGGAGTGGAGTGTGAATTAGTGTCTGAA
CAATGCAGTTCATGAAGCATGTTGATCCTAGGTTCTGTAAGCCCCGTAAACCTATTGTAG
TATGAGGACTGATAAGGCGCCGTTTACGTAGGCGACGAAGAGCCATTGCTTCATTATGGT
TTGGTAACCATGGCATAAAAGGTATGCTTATACCAAGGGACTTAGCCTCCTTTGCCTTAT
GTATTGCAGCGATCTCAGTAAGCTCCCTATCATAAATGTAGTCTTGGCATTGAGCACAGA
AGACATTTCCATAGCTAAGGTCAACATACAGGAAGTGTTTCTTAGATTTGGAGTGTTCTT
GAATATGACCAGCATAGCATGCAAAGTAGATACAGTGGAGACATGAATGCATACGAGGTC
CAGGCTGGCCACAAGCAAAGCAGAGACAGGATGTTGCCTTGTATCTCCGTGCTTCATACG
ACGTACAGGAAACAAAAAATGCATGTACGATTTTATATGGGTTAGTGCCTTTAGCAGCCT
TAAAATTATTTAGGTGTATGCAACCATTGTCATTCATTATTTTGGCTTGTAAATTCACCG
GTTACAAAGATATCTCGCTGACAGAAATTAGAATGAAAGCATAATAAGATAATGACGGTC
GGTAACCAAAATAAAAATAACAAAACACTAATACTGAAAACAAGCAATTAAATGAAAATT
TAAAATTCTGAACCAAGAAATCGAATCTGACTGCTGATCGGTATATCAGGAGGTATATTA
TCTATGCTGCTGAAGCTGACTTGAATGAAATTATTTGACTCTAAGCTGTGAACGGGGCGC
GGGGTGTGTGTGTGTTTTCTTTTAAGGGATTTTATGACCTGGTAACTAAAACC
(2873 bp)

- SilkBase 1999-2023 -