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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN32665_c2_g1_i8
Scaffold_idBomo_Chr27
NCBI non-redundant
(nr)		CCR4-NOT_transcription_complex_subunit_4_[Papilio_machaon]
Ontology
GO:0000166 F nucleotide binding
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030014 C CCR4-NOT complex
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
Transcript
Level		FPKM:9.96 TPM:5.55
ORF EntryO_BomoIG14748_complete:A_BomoIG_DN32665_c2_g1_i8
Sequence
(Nucleotide)
CGATCTGACTAATATTGATGAAAACTCTCGTAAACGAGTAGTGGTTCTTAATTGCGGAGT
TAAAATAATTTATTATTATGATTTCAGATTTTAAAACGGCAAGAGTACTTTGGAAAGTAT
GGCAAAATTCACAAAGTAGTTATAAACCAAAGTACGACATATGCAGGGTCACAGGGTCCG
TCCGCGTCGGCGTACGTGACGTACGTGTCGTCGGCGGACGCGCTGCGTGCCATCCAGGGC
GTCAACAACGTGACGCTCGACGGACGAGTGCTGAAGGGCTCGCTCGGCACCACCAAGTAC
TGCGCCAACTTCATGAAGAACCAGCCCTGTCCCAAGCCCGACTGTATGTACCTGCATGAC
CTAGGTGATCCGAAGGCGTCCTTCACGAAGGAAGAAATGCACGCCGGCCTGCATCAGGTC
TACGAGAGGAAGCTGCACAATCAGCTGCTCGCCTCGCAGCAACGGGATAAAAACAACGAG
GACAAGCAACTTAACGGTTCAGGTAATTCTAGTACGAATGCAGAAAAGAGCGGTTCAAAA
GATGGTAATCAATCGAACTATATACCGACGACAGTGGTCACATCGTCACATATAAACAAC
GTAGTCAATTCTAAATCTAAAGAGGAATGTGCGAATGGCAGTACCAGTTCGAGCAGCAGT
AGCAGTAGCAGGAGCGACAGCAGTGATAGCAGCAGCAGTAGTAGCGGTAGCAGTGCCAAC
GGGAAGGAAGCCTGGCCCAGCCTCGGGTCCTCCCCTCCTTCAGATAGTCCCGCCAGAAAA
CAAACGAGTCCGAAACCACAACAATTACACGTTAAGTCACAAGAAAACGGCATATCAGGG
TCGTCCAGTCCCACGGAACTGCACACGGACACGGCACAGCAGCAGGCACAAACGAGAAAT
GTTAAAGATACACACACCGACACAAACAGAACGAGAAATAAAGACACGAACGGCACGAGC
ACAACACACACAAAGAAAAGCAAAAACGAAAAGTCCAAACACAAGCCCGGCCACAGCACC
GACAGCGGACCCGCGGACCACGCGCCGCGCCCGCACTCCTCGGTCTTCGAGACAGACTCG
CAACACAACTACATCTCCAATGACCTGGACGAATTAGAATCGGATCGACATAGCCTGCTG
GAGACCCACGACCTGCTGGAGAGCAGCGACCACAGCCTGCTGGACGACGACACCCACGAC
CTGCTCAACGACGCCGGCGACGTCCTCATGATGCAGAGGCACCGAGACATGCTGGCCGGG
CTCGTCGACGGCGGTCACCTGCTGCCGCAGCTCAAGGGGCCCGTGCTGAACGGCTACGGA
TTACTGGACAGAGATATTAGTTATGTTAACGATAGGCCAATTAGTCAAATGAACCAGGGT
TTGCTGGACCAGAAGGAGATGCTGTTGAGGGAACGAGAGCAGAGCGACATGCTGCTGCGG
CAGAGGGAGCTGCTGGCGCGGCAACACAACGTCATGGTCGAGCCTAAGCATTACATGCCC
GCCTCCAGTATAGGAATGGAATCCGCTAGTGAACTATTAGGTGCTAATTACCACCGGAGC
CCCAGCATGGTGCCGGCGTTCGGCGCGCTGCCGCCCTACGCGCTGCCCCGGCCGCAGGTG
CTGCACGCGCCGCCCGCGCACGCCGCGCACGCCGCGCTGCTCAACGGGTTCGACGCCGCA
CACAACAGTGAAGGTCGATATTTAGCGGAGAACATGGATAAGTTCTTCACGGACTTCCAC
AAGGCGCAGCAGCTGCGGCTGCACGCGCGCGCCGGCGACGAGCGGCGCTACCAGCTGCCG
CGGAACGTGCTCAGCGCGGAGGCACTCGAGATGGAACACAAGCAGAGAATGAACAACGTA
CGTAGTGGCGAGCCGGCGGGCCGGGCGGCGGGCGATGGCGACGACGACTTAGACTTTGAT
CCGTTTAAAGAGACACAGAAAGCGTTTGCGGAACTCATGGAGAATGAAATGATGCAAAAT
GCCGTTTCGGGCGGTGACAACGCACGTCGATCCAGGTTAGCGCCGCCGGGCTTCAGTCAT
GTCAATAACACGTACGGCGCCGGCGGGCCGCGCCTCCACGCCGCACAACAAGGGTATAAC
ACGAACAGTCCGATGTTCTCGGACTGGACGCAGATGGACCCCGCGATCATGTCGACTTCG
GTGAGCGGCGGCAGCGGCCTGTCGCAGCACCAGCACGACATGTTCGTGCGGTTCAACGCG
CTGGGCGTGACGCAGGCGCCGCCCGCCCCGCCCGCCCAGCCCGCGCCCGCCTGGCCGCCC
TACGTGCCCCTGCC
(2294 bp)

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