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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN32665_c2_g1_i1
Scaffold_idBomo_Chr27
NCBI non-redundant
(nr)		CCR4-NOT_transcription_complex_subunit_4_[Papilio_machaon]
Ontology
GO:0000166 F nucleotide binding
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030014 C CCR4-NOT complex
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
Transcript
Level		FPKM:19.27 TPM:10.73
ORF EntryO_BomoIG14724_complete:A_BomoIG_DN32665_c2_g1_i1
Sequence
(Nucleotide)
GAATCACAGAACGAATCTTGTAAAAGATTAGGCCATTTCATAAAACAAATGTATAGTAAC
TCGCAGAAAATATCTTCAAAAACAGTTATATTTATTTCAGCTTTGCATTTTATTTTAAAT
TGAGCATTGAAGCTCCTTACGGGTCCTTTGGAAAGGATTAATCTTCTTCTCTAGCGAAGG
GATAGCAGTCTTAGTTCTGCAATAGAAAAAAGATTTGCTTTGAGAGGAGACGTAAGGTTG
TCAATTAAGAAAAAGCTGACTTTGTTTCATTGCTATAGGCAAGTTGGAACTATTGGCTCT
CGGGTCTAGGATGTCAGTGCTGAATCAGAGTGGAGAAGAACAGGTGGAATGTCCACTATG
TATGGAACCCTTGGAAGTGGACGACCTCCACTTCTACCCGTGTACATGTGGATACCAAAT
ATGTCGGTTTTGCTGGAATCGTATTCGAGAAGGCGAGAACGGCCTTTGCCCAGCTTGTCG
GAAGGCATACCCAGAAAACCCGGCAGACTTCATTCCTCTCAGTCAAGAGCAGGTGGCAGC
GATAAAGACGGAGAAGAAAGCCCGCGAGCAGAAACGTCGCAACAAGACGCTAGAGTCGCG
GCGTGCGCTCGCGAACGTTCGCGTCGTACAGAACAACCTCGTGTTCGTCGTGGGCCTGCC
CGTCAGACTCGCAGACCCGGAGATTTTAAAACGGCAAGAGTACTTTGGAAAGTATGGCAA
AATTCACAAAGTAGTTATAAACCAAAGTACGACATATGCAGGGTCACAGGGTCCGTCCGC
GTCGGCGTACGTGACGTACGTGTCGTCGGCGGACGCGCTGCGTGCCATCCAGGGCGTCAA
CAACGTGACGCTCGACGGACGAGTGCTGAAGGGCTCGCTCGGCACCACCAAGTACTGCGC
CAACTTCATGAAGAACCAGCCCTGTCCCAAGCCCGACTGTATGTACCTGCATGACCTAGG
TGATCCGAAGGCGTCCTTCACGAAGGAAGAAATGCACGCCGGCCTGCATCAGGTCTACGA
GAGGAAGCTGCACAATCAGCTGCTCGCCTCGCAGCAACGGGATAAAAACAACGAGGACAA
GCAACTTAACGGTTCAGGTAATTCTAGTACGAATGCAGAAAAGAGCGGTTCAAAAGATGG
TAATCAATCGAACTATATACCGACGACAGTGGTCACATCGTCACATATAAACAACGTAGT
CAATTCTAAATCTAAAGAGGAATGTGCGAATGGCAGTACCAGTTCGAGCAGCAGTAGCAG
TAGCAGGAGCGACAGCAGTGATAGCAGCAGCAGTAGTAGCGGTAGCAGTGCCAACGGGAA
GGAAGCCTGGCCCAGCCTCGGGTCCTCCCCTCCTTCAGATAGTCCCGCCAGAAAACAAAC
GAGTCCGAAACCACAACAATTACACGTTAAGTCACAAGAAAACGGCATATCAGGGTCGTC
CAGTCCCACGGAACTGCACACGGACACGGCACAGCAGCAGGCACAAACGAGAAATGTTAA
AGATACACACACCGACACAAACAGAACGAGAAATAAAGACACGAACGGCACGAGCACAAC
ACACACAAAGAAAAGCAAAAACGAAAAGTCCAAACACAAGCCCGGCCACAGCACCGACAG
CGGACCCGCGGACCACGCGCCGCGCCCGCACTCCTCGGTCTTCGAGACAGACTCGCAACA
CAACTACATCTCCAATGACCTGGACGAATTAGAATCGGATCGACATAGCCTGCTGGAGAC
CCACGACCTGCTGGAGAGCAGCGACCACAGCCTGCTGGACGACGACACCCACGACCTGCT
CAACGACGCCGGCGACGTCCTCATGATGCAGAGGCACCGAGACATGCTGGCCGGGCTCGT
CGACGGCGGTCACCTGCTGCCGCAGCTCAAGGGGCCCGTGCTGAACGGCTACGGATTACT
GGACAGAGATATTAGTTATGTTAACGATAGGCCAATTAGTCAAATGAACCAGGGTTTGCT
GGACCAGAAGGAGATGCTGTTGAGGGAACGAGAGCAGAGCGACATGCTGCTGCGGCAGAG
GGAGCTGCTGGCGCGGCAACACAACGTCATGGTCGAGCCTAAGCATTACATGCCCGCCTC
CAGTATAGGAATGGAATCCGCTAGTGAACTATTAGGTGAGAACCATTTTGTTCTCAGTGC
CATGCTTACTGAATTGCTTAGGTATGTGGACGAGCTTACGGCCCACTTGGTGTTAAATGG
TTACTGGAAGATAGACATCTACG
(2243 bp)

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