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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN32655_c4_g3_i2
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		whirlin_[Bombyx_mori]
Ontology
GO:0001895 P retina homeostasis
GO:0001917 C photoreceptor inner segment
GO:0002141 C stereocilia ankle link
GO:0002142 C stereocilia ankle link complex
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005884 C actin filament
GO:0005929 C cilium
GO:0007605 P sensory perception of sound
GO:0010628 P positive regulation of gene expression
GO:0021694 P cerebellar Purkinje cell layer formation
GO:0030426 C growth cone
GO:0032391 C photoreceptor connecting cilium
GO:0032420 C stereocilium
GO:0032421 C stereocilium bundle
GO:0032426 C stereocilium tip
GO:0036064 C ciliary basal body
GO:0042803 F protein homodimerization activity
GO:0042995 C cell projection
GO:0045184 P establishment of protein localization
GO:0046982 F protein heterodimerization activity
GO:0050953 P sensory perception of light stimulus
GO:0060122 P inner ear receptor cell stereocilium organization
GO:1990075 C periciliary membrane compartment
GO:1990227 P paranodal junction maintenance
GO:1990696 C USH2 complex
Transcript
Level		FPKM:4.71 TPM:2.62
ORF EntryO_BomoIG14135_3prime_partial:A_BomoIG_DN32655_c4_g3_i2
Sequence
(Nucleotide)
GCCGCTAGGAGTGCTGATCCAACTCCATACAAATTTGAGTAAACTTTTACGCGATCGAGA
AGTTAAAAAACTCGCACTAAGCACACAGATGTAATAATACACAGAGCATGAAACATCTTT
ACATAATACGAATAAATACGAATATATGGAACGTGTACAATATCTATAGCTGTATGTAAT
TTTAAAAAGCTTTAGTATATACCCACTTTAATTACATTGGGGAACGCAGTCATATTAAGT
TAAAATATAGTTCATAATAGCCTAAACAATTATTGTTTTCCAGATTAGATGTTACTTCTA
AATGATTTGTATATAAATCTCATTTGGGTGCCGAAACAGTACATTGATTCTAATATCTAA
AATAACATTTGATTATATTGCACACATTCACTTATTTACTACCTTTTTAATTATTAGAAT
GGGCTAAAATCCCTCTCCGCCAAATTTTCGTAAACTCACCGCAAAACTACCTAATGGAAT
GACAATGTAAGACGCATGATTAGTGTCAGAACTCGCTAAGCAAACTAGGAAATTCATAAT
AATATATCTATTTCCACACAATTAGCAAAGATACATTTGAATATTTAATTTAAAGTTTGA
ATACAATTAATTTAAAATCATTTAGATCCTGAATGTTTCTGCAAATCGTTTATAAGTTAA
GTTAGAAAGTAGAAAGTTTGCTTAGGAGCGCGTCACGTGCTGCAGTCTGCAAGCTCTGCT
CTACTGATGACGACGATGATGTAGCGCTAAGGCTGCTCAGTCGTGACTTCGGTTATATAC
CAGCACCATTAGCTCATGCTATGATTGATGGCGTGGTGGATATCCGCGTTCACGCAAACA
ATAGAATCGGTACAACGAGCTGGGATGAGTGGCTCGTGAACTCCAAATCAACGTTGATGG
CACACGGATGACGTGACAGCTCGGTGTGGCGCAAGCACTGATCGACCACTACTGACAAAC
TACCGATGTGAACATGGAACGTTTTCAATAGTGTGATAGATTCCTTTCCATAGCACCAAT
GCCGTTCGGTAAAACAGCGCGAATCCTTGAAAAAAAAATGGCTTTCGTGAGAGATTTCTG
AAACTACTAATTCTATTAAAGTTAGTTTTGGATCGACTATCGAACGAATTTAAACTACCT
GTTCGAGATCGTGATCGATGCGTGAAGATTTTAGGATGAACTTATCGTTATCGGTAAAAG
AGAGATTCTTTATAAAATTCAGTCGCTGACTACTTTTAAATTTCTTGATTTCTTTATTCT
AGAAAATATTTAACAAAATTCACTTCGGCCCGTCCAAAATTTGTTCCGTTAGGAGACAGG
AACCGACTTAGTTTACGAATTAGAACATTCGGGGCAGTGAACATTGCAAAACTTCCTAAA
ATTTTGACAATTCTTCTAGATCGAACCAATTTTTCGCCTCCCTTGTGCCATTAATTTTGC
ATAGCCTACTGATTTACCTGCATCGTATTTTCGCCATAGTTCTCATATCAGTCCGTTGCA
ACGTCATATTATTTGAAATATGGCATGTTGATCATCATCGTTATTCCGATCGTATGACAT
CCCGTAGAGCGGAACACGCTTTCATTTTCAACCACAAATCAAACACGACCTTTACCTTTC
TGCTTTTCAGTTTAATAAGCTTATCCGCAATACAAATTGTTCTTCTATTTAGTTTGAAGA
TAGGAATTCGGATAGAAACGTAGGGTAGGATCGTGTTGGGTTCGTATGTTGTTGAAGAGC
GCATTTAGAAGAGCATGTGGCAGCGCAGGTTGGAGTTGGCTATTCCGTGGTGTGCGCGGT
GAGGTCGACCCCCAGAATCCCGCTGCCCAGCGGGACCGGTGGGTCGCTGGCGGGGAGGGA
CAGTAGATGTTAGGCCTCCAGAAATATTAAAGCTGTCGGCTTCGGTTCCAAGTTCGACTT
TTTTGCTTCCACGACGAGGAACTCGATCTCTGGTTTATCTCTTTGCGCGAATGATTCTGC
AATAAGTCGCGCTACGTCCTGATGTTGCATGCCCTCCACGCGGTGTCCATCTACGGCCAA
AATCAGCTGGCCCACCTCTAGTCCTCCAGCCTCGTATGCGGCTCCATGTTCATGTATATT
TATAATTCGAGGTAGTGGATGTTTGGTGTTAGCGCCGCCTTCTATCGCTATGCCGAGTAT
TGGTTTAGTCTTTTTAACGGTGATGTGTAAGTTTCCGTGGTGGTCCGATACGACCCTAGC
TGCTCGACTTTCATCGGTCTGCTGATCTCCGTGCTGTAGACGCTGCATTGACTGATGCCT
TCGAATTCCTCCTCGATCATCAATCAGAGCATTGCCTTCCTCCTTCATGTCGAAGCTCCG
AGACATCTTATGTGCTAGCTCTAGAGGTCGTCCCCAGTACCATGACTTTACTTTCTGCGT
CCAGCCACCGAGTGATGAGCGCAGCCCCTCGAGATAGCCGCACTGATCCGCGTCATCATA
GTGCTGGGTATGCAAGGCTGTGGTGCTCCCTTCGCGCGAGTTGCAAGGAGAAGAGTGCCG
GCGAGAATGTCTACCTTCTTCTTCGTACTCCTCGTGCGGTGGCTCCAAGTCGTCGTCCTG
AGGTGCGTCTGCCGCCCGCCACGTGCGCCCGCTCCTGTAATTATCATGCGGCGGCAAGCC
CAATCCGGAATCCTCGGATGGAGAACGGTGATCGGCCACGAGAGGAGCCTCCACCGCTAC
TTCCGGGTCGTGCAATTCGTGCATCGTCGATGATGGCAGCATGTTGTGACGCTCGCTGCC
ACGCTTCAGATGGTAGTCGCCAGATTCGTCGCCTTTTCTATAAACAAGCTCATCGAAGCG
TGGTCTGTCTTCCGGCACCATAAACTCTCGGATCTCGGTAAGTAAAGTATACTTCTGCGG
CGTATCTAAGAGATCTCTTAGTACTGTAAGGAATGAGTCGGGGTTGAGTCTTCTTGCAGC
ATATTCTTCCATATAGTACGCGAGTGCAGGCAGATCGCTCTGCGGTATGAGAGACCGGGC
CTTTTGTTCCACAGCCACGGAAGCTGCCCCTCTTCTTTTGCCCCAGCCGCTTATCCTGGG
ATTTGGATCTCGTTCACCGTACGCTGTACACGCGTGCGGAACTTTCCCGACATCTCGCAC
AAGCAGAGACATGCGCTTGTGATACTTGAGCTGGGCCACCGCCTCGTCGTGGGTCACATC
CACGAATGATTGCCCGTTAACTTCTAATATCTGATCGCCGACCATGAGACCAGCTCTGTC
TGCAACTGAATCCTTGTCAACTCCAGTAATGTAGATGCCGAGATTGTACTCCAGTCCGCC
TCGGATCATTAGTCCCAGCGATTGCCCTGGCTCTATACATAAATCCACCCTTCTCACTGA
ACGGTCTTTACTCGCAGATCGCGGGGGTCGGAGTGGAGGCGGAGAGGCAGGTCGTCCGTA
CCGGTCCATCCAGGAGCAGGAGGCCCGCCCAACCAGAGCACCCGCCGTTCGCACCGTCAT
CGTCAACTGACGACACGACTTAAGCATCTTGAGTGCATCTTCGTGCGAAATTCCGGAGAA
CGGCGTGCCATTGACCTGCAGGATAGAGTCCCCGGGACGCAGGCCAGCTCGTTCCGCCAC
TGAACCCTCCTCTACCCGCGATATGTAAACGCCTACACCGGCTTCTTTTCCGCCTTTAAC
GCATATGCCAAATCCGTGCGAGTCGGCGGGGTCCCTGCTCATGGTGACAGTGCGGGTGGC
CGGCTCCGTAGGCGGCGGCGCTCCGCCTCCCGACGAGTACGGCCTCTCCCGGTCTCGCTC
GCCTCCGCGATAGATCGCATGATGTGTAGTGCTGCTTGGGCTACTGGCAGGAGAGTGTCT
TCGAGCTGGAGCAGGCAAAGGCGCTGGTGGATGCGAAGGCGGCAGTGCCTTGCCCAAAGC
AGCAGCCCCTCCTTGACCAAATAACCTGAGAACTTGCTCCGGCGATATCGGACGCTTTTT
GCCGTTACTCACACTCAAGTGGTTCGTGCTGTTTCGTAAGCTTGTTGCGCCCACTGCAGT
GCTAGCTATGTTAGTTGATCCCAGGTAAGGTGTTCTAGATAATTTCCCGGAGTAGTGATG
CGAATAAGAAGCATGATGGCCGTGCGATGATGCCGGCCTTTCGATAATTGTGTACGATGT
GCCCGGAGGAGAGTAGTACACGCCACCCCGGGCACGAGCACGTGCGTCTTCCGCCTCATA
GCTCTGACGATTCTCTTGCAGCCACTGCTGCGAACGTGAATGCCTGGCTAGATGATGTGC
GGGTGGATGTTGTGGCGTGGCAGAGCGTGTCCAGCCGTAGCCCTGTGCTGAGGAGTAGGG
CGGCGGCCACCGCGAACCGAACTCCGCCAGCTCGGAACCCTCGCCGCCCTCCCCCGACCT
CATGCCGGGGGTCACCCTTCCCTCTTATTATTTCATTTTGAATGTATTTCTGGTGTTTCA
CATGTCGCCCGCCAGCGCCGCACAAAACCTTCGCATGTCACATATTATTGAGATTAATAA
CATACACGCACGTGGCACAACCACTGCAATAACGCTACAAGATACGTATATTTATGAATG
GAGTGCAAGAGACGGCGGTCCTTTAACGCGCGTGTTCGTATTGTTGTGGAAGGTTACCAG
AATCGTAAGGTTCTCCTCGATGCGAGTCTTCGGTGTGGAGTGGCGCGGACGAGCGCGCGA
GGTTGTCGGGCGGACGGTGAGATCGG
(4706 bp)

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