SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN32653_c0_g1_i10
Scaffold_idBomo_Chr16
NCBI non-redundant
(nr)		DNA_replication_ATP-dependent_helicase/nuclease_DNA2_[Bombyx_mori]
Ontology
GO:0000076 P DNA replication checkpoint signaling
GO:0000166 F nucleotide binding
GO:0000729 P DNA double-strand break processing
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003824 F catalytic activity
GO:0004386 F helicase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0017108 F 5'-flap endonuclease activity
GO:0032508 P DNA duplex unwinding
GO:0033567 P DNA replication, Okazaki fragment processing
GO:0043139 F 5'-3' DNA helicase activity
GO:0043142 F single-stranded DNA helicase activity
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
Transcript
Level		FPKM:0.11 TPM:0.06
ORF EntryO_BomoIG16300_complete:A_BomoIG_DN32653_c0_g1_i10
Sequence
(Nucleotide)
TTTGGTATTAAATGGTTACCAACATTATACAATACAATAGTGACTTACAACTAAATGTGT
CATTAATGTTAACTTTGTCATAACTTTGTCACTTGAATTCGGTGTTTTGAAATCAGAGTA
TTGTTAACAAAAATGTTTTTTTAAGTATCTAGTGTGGTATGATTCAACGTTAAGACATAT
GATTGCTTCGTTCAGAATGACTTCTGTCATTATGCTGTCATCTTCTTTTTCTAAATTCTT
TGTTTGTGATAATCCACACCTGATATGCGATTTATTTTCCCAGGTCTCCAGAAAGCCATA
GTTCCTTTAGAGTTGAAAAGTGGAAAGGCATCTGTGTCGGCAGAACATCGCGGCCAGCTC
GTAATGTATGGAATGATGCTGAGCTTACACAGAAACGAAGACCCCACTGTGGCTTTACAA
CGTGGACTGTTGCTTTATTTGAGAGACAAAGTAGACGTGAGGGAGGTTAACTGTGGATAC
CCAGAGAGGCGCGACTTGGTAATGCTGAGGAATCAGTTAGTTGAAAATCTCGCTTCAGAT
CCCAAAGATCCAGATCCAGAACAGTTAACTGATATTGAAGATGCCTCATTTTTACTTCAG
CAAAAGCTACCAGAACCGATCAATCATGAGAGAGCATGCACTAAATGTCCGTACTTATCC
ATTTGTTCTGTCCATTTGTGGCATTCGGGAGGCCCATCAGTCTCTGAAAATCATCCGCTG
TCAAAGTTACAAGGCCAAGCACTAGGACACTTATCCAAAGGTCACATAAAATATTTCTTT
CATTGGACGGCTTTACTTAAGATGGAAGAGAAATTTCAAACGAATTCATCACCTTTACAA
GCCTTGTGGACTGAGAGTGCTGAAAAAAGAGAAAAAAGAGGGACTTGCATTCCCAATCTG
AAAATAAAGGCAGTGGAGCAATCAGGTGAAAAACATCTTCACGTATTTCGACGTTCAGGT
GTTAGATTAAATAGAGAGAAAGGACCTCAAGAGGGGGAGTTCGCAATAGTCAGTATCGAG
GGCAGACCGTGGGTAGCCGCGGGAGTTGTCAGCTCAGTTAGTAGCGATGAAGTGCAGATA
CATTTGGAAAGAGACTTGAGTAAACGTCTCTGCGAAGACACATTGTACCACATCGATTCG
TATGAGTCTTATTCAACTATTGTACAAAATCTGTCCAACCTCGGCGTCTTGCTTGAATAC
AGTGAAAGGTCGGAGCGGCTTCGAACTTTGATAATAGACAAAACGAAACCTCAGTTTGAG
GCGAAGCTACCACGCGAAGTCGGCCGGCTCGGCATCAAGCTCATGCGCTCACTGAACATC
GAACAGCAGCGAGCTGTACTAAAAGCTCTTTCTGCCCAGGATTACGCACTCCTCCAAGGT
CTCCCGGGAACTGGGAAAACTCAAACCATTTCCGTGCTGATACAAATGCTAGTTGGACTC
AAACAAAGAGTACTAGTGACTGCTCACACGCACTCGGCGGTCGACACTCTGTTGAGTAGA
TTACCAGAGACTATGAAAGTGATGCGGTTGGGTTCGACGGCACGTGTTGATATAAATCTG
CTACATCGCACCGAGAAACAATTAACAGCTTCTTGTCGCACCGTCGAAGAGCTAGCAAGA
CTGTACGATTCAATGGAAGTCATTGGTGTAACATGTTTGGGGTCCACGCACGCCATACTC
TCTAGAACGACGTTCGACATGTGCATTGTTGATGAAGCTACCCAGGTATTACAATGCACG
GTATTGAGACCACTGTTTGCTGCTAGAAGATTCTTGCTAGTTGGTGATCCCAAACAACTC
CCGCCTATCGTGAAAAGTCGCGCCGCAAGGCGTCTCGGCATGGAAGAGAGTCTGTTCCAC
AGATTAATGGACGAAGAAGCAACTTGCACCTTGCATCTGCAGTATCGCATGAATCAAGCT
ATAACCGATGTAGCGAATCAAGTAGCTTATGACTCGCGTTTGAAATGTGCCAACGGACAA
GTTGCTCTAGCTACACTCAGTATTGATATGCAGGTAAAACTTACAGTACATAATATATAA
TGATAACGATATCACGGTCGAATTTATTTAGTAGGTACTCTAGGAATTCGAAGAAGAGGA
TGACCCCGGTATTCTTCTTCTCCCAGTTCTTCTCTGGTGGCGCCGGAGTCCGACATAACC
CGGTCTCTTACCCCCCTCGACCGGGTACCCG
(2191 bp)

- SilkBase 1999-2023 -