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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN32628_c2_g5_i4
Scaffold_idBomo_Chr3
NCBI non-redundant
(nr)		uncharacterized_protein_LOC101735487_isoform_X2_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0005829 C cytosol
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0017070 F U6 snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0097526 C spliceosomal tri-snRNP complex
GO:1990726 C Lsm1-7-Pat1 complex
Transcript
Level		FPKM:0.04 TPM:0.02
ORF EntryO_BomoIG14330_complete:A_BomoIG_DN32628_c2_g5_i4
Sequence
(Nucleotide)
GACAAAGCGACCGGTTCAATATACCGGTTATGACCGGTCCGGTTTACATCTCAAACACCC
ACCCGCGTAGTAAAGGTACCTACATAGGTACATAATCTTATTATCTTTGGTAAGAATCAA
TACTGCCCGACAAGAAGTTACGCGAGTCTGTGGGAAATGGTCATAAACCCGCTCGTCAAA
GGTGAAAATACATGCGCCATTCTGGATAATTGCCCATTCATTCAAACGGGAGATGACGTT
TATGATGCTCTCATAAACAACTTTAAGAGGCATTACCTAACCAATCGTGCACCATTTGGA
ATTCACTTAAGTTCTACGTGGTTAAGAAATAATGAGTACTTGGTGGCTTTTAAGAATTTC
TTGAATGAGTTGCAAAAACTACCTGACGTATACTTTGTCACCTACAAAGAGATACTTGAT
TGGATAAAGAGACCAACACCGGTGGTACAACTAAAGAAGTTTCAGCCTTGGCAATGTAAG
GGGCGACATTTCCGTGAAGCTGAAATAGCCTGTGCCAAACCAAACACATGTAAATTACCT
TCCAAAGTATTGGAGCATGATAAATACATGATTACCTGTACTGAATGCCCAAGGAGTTAT
CCATGGATAAGAAATGAATTCGGATTTGAATAGTTTCGTTTTATTTTTATTCTAGTTATT
TCAGAATTAAATGTGTTAGTTGTAACTCATTCAGTGTTTGAAATAAAATAAAATAAAGTT
GGAAAAACTACAATTACTATTTACAAACAATTACACAAAGTAAATAAATATTTTACTGCT
GTATATATCTTATAAGGGTATTAGGAAGTTTGTCTGGAAAATTGGGTATCAGACAATGAT
TTTTTTAGGCCATTGAAACATGTTCATTTTGATTTATTTGGATATTCTCTTGTGCAATAT
TTTTAGATTTTAATGGTTATTACATATTTTTAAGATTGTTTTTATGTTTTCAAAAATAAA
TTATTTTTAAATTATTATCTGTCTATATGAATAAAAATCAATGTTGTTATGAATGTTGGT
TGATCCATTATGTATTCTTAAACCGTTCATCAGATTGTTGTGAAACTTGATACAATTTTT
GTAGGCTCTTCATGGAAGGTTTCTGTACAAATACTACTAATGTAGAAGAGGTGGCTCGGC
TCATATGTAATTTCAATAATCAATATTTTTTTATACAATTATTTACACCCCAAAATGTAG
CTTGAGTTTCACTGGTAATTTTAGTAAATTCAGATTATTGATAATCATGATTTTTGTGAT
AATATAAAAGAAAATGTAAATGCCTTATTTAAAAATTTATTCTTATCACAACAATTATAG
TTATCCTTCCTGGTTAATAAATGGGTTTGGTATTGCTTCCATACCATCCATTGGACATAT
TAAAACAACTGATGTACCTCGGCAAACAA
(1409 bp)

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