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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN31567_c2_g2_i26
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		squid_protein_homologue_isoform_X1_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0000785 C chromatin
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0007293 P germarium-derived egg chamber formation
GO:0007297 P ovarian follicle cell migration
GO:0007314 P oocyte anterior/posterior axis specification
GO:0008069 P dorsal/ventral axis specification, ovarian follicular epithelium
GO:0008298 P intracellular mRNA localization
GO:0009953 P dorsal/ventral pattern formation
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0017148 P negative regulation of translation
GO:0019094 P pole plasm mRNA localization
GO:0030529 C ribonucleoprotein complex
GO:0030720 P oocyte localization involved in germarium-derived egg chamber formation
GO:0033119 P negative regulation of RNA splicing
GO:0035062 C omega speckle
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:12.19 TPM:6.79
ORF EntryO_BomoIG100207_complete:A_BomoIG_DN31567_c2_g2_i26
Sequence
(Nucleotide)
TTCCGATCTTTTTTTTTTTTTTAAAAGTCAATTATTTTATTTACAGATTTTTATTACGAC
ATACATCTTGTGTGTATCTCTGGTAGTTTGTTCATGTCAGATAGCTTATTCTAAAAATTT
AATTTCATCCCTATTCAATGGAAGAAACAACTACTTTGTAAAAAATACATGATTCTGAAA
ACTGAGGCGCATCACCCGAATTAATTAAAAATATATACTACAACATTTGTCTGAGATCCA
GAGTATCTACTGTCGTAGTTGAGGGCGGCTCGCACACAAGCTCACGCATTCACATTCACA
TTCACACATCTATTTGTAGATATACCTTTCGGCACTGGTTCCTGCTACCATTAATTTGTT
TCATTAAATTAGTAGGTACCAAATTTTCGACAAATAATGTCAGTCTATTCAATCAGCAAT
AATACTCAGAAACTATAAATCATACTATATTATAATAAATCGAGACGTTAGTCGACGAGC
GCGACCACGACACTGTTTTATCCTTAAATTCTTACAACGATTACTCTCTTAAATTACATT
AAACGTGGAATGGAATGACGCGCCCTCACGGCGGCAGGACGGCAGCGAGGGCGCTCATCA
CCGGTCACTTAACCTGAGTGGTAGTGTATCGTGTGTCGCAGTAGCTAGTAGGGTTGGTGT
CGCTGTGTGGTCCGCGCTCCGCCGCCTCCCCCGCGCGTCTTGCCCCCCTGGTACCCTGCG
GCACAACACAACCTCACCACACCGCACTATCGGAATAATGTGACCCGTCCGACTCCACTC
AATCAATTGACAGACAACTAGCAGTAGTTTAGAAGAAATTATTTAATCCATATCGACATT
GACTTCTGAGTGTGAAAAAGATCTCCCGAAAAGATGTAACCACAAAATCACCAAACAAAA
AGGAATGTTATTCAAAATTATAAGTTTTTTAACCTAACCTCCATATACAATGGAGAAAAT
GTGCTTTACAAAGAAAAGTATGTTCTGCTAAACTACACTACTCAATAAAATTATACCTGT
TATTTGACTAAGCATATCCAATGTCAACTGATTAGACAAATTCTTTAAAATAAAATGTAA
TTTTTGAGAATCAGACGAGTCCAAAAAACACCAATGACATTCAAATCTTATCTTTGATGA
AACAAAAACACATTCAAGTGTTTTAGTGATCACACTTAATTATGAATGTTAATTGAAACT
TATTCTATTGTTCATGCTACACTTAAAACTAAAATTTCAGTAGAAGTCCAAAAGTTTAGT
GGTGAGATTTTCTAATCTAAAATAGAGTAAGTCTACAGTTAGTAACTTCAAAGAGATGTG
CAACAGACTCGCAAAGATTTAGTTGTGTTCCTAAATATACTTTCCAATGTTATTTGAACT
ATAAATATACAATAAGGCCATGCGTGCCTACGTAATAATGCGTTTGGTATAAATTTTGAT
AGTGGTCCGAATATGGTGTAGTTTTTAAGCAAAACAAATTAACAATGAATTGAAAATTAA
TGATCATGAACATTTTAACAAACATTCTTCTTGATCCTGAAAACTCAGAATGATAAGATA
GTATTGTAAATTTGAGTTTAGTGTTATTGCAAAACTTCACATGAAACTTTGTCAAGAACA
ATGTTTGCAGAAGAATTGCATAAACTATCTGTGTGCGAGCAAGTGTGCTTCGAGTACCTT
TCCCTCGCGGAGGCTGACGTGCGCCGTACCCGCCCTCGTACCCTCCGTACCCGGCGTAGT
CTGCCCACACAACAACACCGTTACACTGCCGCCCCGGCATAACCAGCGCAACCACTAACC
ATCTTAACAACTTGCATCTCTAATATAAATTCTACTCATACCTAGATGCAAAGGTTGTTT
TAGATTAAAAATAGTCTCAAATCTAGAACAGGAGACTTTTTAATCTAACCTTTTCTACTC
TCATCAGCATCATTAGTATTTAACTAATTTCTTGAATTTTAAATTGTTTAGGACTTAAAT
GGACTTGCCACATATACATCGACTGATGACTTAATTTGTGAAACTCATAACATTGATCAA
ATTGCAAAGCGAGACGCCCCCGGCCTCATGTAAACCTTAAAACTTATGAGTTCTCATTGT
ACTTGCTGTTAGTAAGGTGGACAACTCATTACTCCATTAGTCCAACAGTTAGGTGTCAAT
TAAATGTGAGGGCATGCACTGTTAGTGGGGCATTCGGCCGGCGTGCGGCAAGGCAGGGAG
GAATGGACCAGGGTTTTATATGGAAACACATTGAGAATTTTATTAACAGTGCTTTATTCA
AAAGCTTTCATCATATCTTTATCACTTTCACAATGTCTCTCCATATTTACCCCATTTCCC
AAATGTAGCATGTAGCGTGAGTGTCAAATAGGTAAAATAAATGATACCAAAAAAATTAAA
CTCTAGCGACATGGCTACATAAGTCAAAGGTGGTATTACAAATAAACACTTATAAACATA
AGGCAGGTAACATAATATTATATACAAGTATACTATGTAGTACCCGTTGAGACAATGACA
AAGAGCGATAGGCTGAGTGGGCAACTGCTCTACAAGTAGCGGCCCGGGCGGGCGCGCCCG
GTGAATCGATATAAACCAAATAGCAAAATAAATGATAATAATTTGAAAAAGATATACCAA
ACGATTAATTAATCCTACTTTACTCGAAACTAGAAGGCCGACCCGACGTTACTTTTTTTT
GATCACACACTGTCGCCTCGACAACATACACTATGCATCATCTCGATACAATATAAATTA
TATACATTTATATAATATCGATATAAAAATAAATACTCTCTACACACTAAGTTAATACCT
ATGCTTCGCGTGATGTCGATCTAACTAGATACAGTCGGCGCGAGGGGGACGCTCGCAGCT
AGCCTAGCCTTACTCTACGCGGAACTCCTACACTAGGGATCAGGTAACATCAGTCGAGGT
AACGTGTCGGCCGCGAGCCGCGTTAGTACTGCTTGCCGCGTTTACCGTAATTAGGGTATC
CAGAGTAATCGTAACCGCCGTAGCCCCCGTAGCCATCGTAACCGTAGCCCCCGTAGCCGT
AGCTGTCGTATCCGCCGCCATAGCCACCCTGACCGTAGCCGTAGCCGCCGTAACCCTGGT
TACCCCAAGGTTGGCCGCCGTATCCACCACGGCCGCCGCGGCCTCCTCTGGCACCGCGTC
CGCCGCGGCCACCTCGCGTGCCTATGCCTCCGGGGCCATCTGGTTTTGGTGTTGCACGCT
TCACATCGACCTCCTTTCCACCAATTGTTCTTTTGGGAGTCTTAAGCAAATCATTTACAA
CTTGCTCAGATTCAAATGTGATGAAACAGAAGCCCTTTCTTTGGTTCTTTGTTTTGTCAA
AGGGCATCTCCACTTCTAAGATAGTTCCAAATTCACTGAAGAAGTTTCTGATTTCATCAT
CTGAGATTTCACTGCTGAGTCCTCCGACAAAAATCTTCCCATGTCGTGCTTTAGCCTTCT
TTGGGTCTACTTTCTTGTTGTTGATGGTGTGTTCACCAGCAGCCATGACCTTGTCTATTG
ACTCTGGGGCCTTAAACACAATGAAGGCAAACCCTCGTGATCTGCCTGTGTTTGGATCTG
TCTTTACATTAATACTCTCTATTTCACCGTATGCTCCAAAATGATCACGGAGCTCCTTAT
CTGTGGTCTCCCAGCTCAGCCCACCAACAAAAAGTTTTCTGTCGTCATCGCGTCCTGGGG
CCTCAGCACTGTTATGATCTTGCGAATCACCGCCACCGTTCTCTGCATTTCCATTAAGCT
GGTTGTCGGTGGTAATATCTTGTGCAAAATTATCGTTATTAGCCATGACTAAAATTACGC
CTAATAATTAGAATTAAACTAAAACTATGGTCTACACGCGACCTTCAACAACGAATGCCA
AATGCAGAAGAAAGAAACTACGCGATGACGCGATGAATCGGAGTCGGCGCCAAATGGTTC
GTTATGTTGGCTACAGCAGAGAGACGCTTTTTTTGCATTGAAATTTGCTCCCCTCCCAAA
AATCAACCAATCAGGTAACGGCAGAACAAAGGGTCAATGGCATTTATTCATCGTTAAAAA
GAGAGAACAAAATTTTTCGCCTTAACCAAAACGAGATAGAATTTTACATTCAATCAATAC
CAACTACCAACATTACCAAATAACAGCTTGTTTTTTGAGCAAACAAAGGAAAAATACCAT
GC
(4202 bp)

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