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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN31567_c2_g2_i20
Scaffold_idBomo_Chr6
NCBI non-redundant
(nr)		squid_protein_homologue_isoform_X1_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0000785 C chromatin
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0007293 P germarium-derived egg chamber formation
GO:0007297 P ovarian follicle cell migration
GO:0007314 P oocyte anterior/posterior axis specification
GO:0008069 P dorsal/ventral axis specification, ovarian follicular epithelium
GO:0008298 P intracellular mRNA localization
GO:0009953 P dorsal/ventral pattern formation
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0017148 P negative regulation of translation
GO:0019094 P pole plasm mRNA localization
GO:0030529 C ribonucleoprotein complex
GO:0030720 P oocyte localization involved in germarium-derived egg chamber formation
GO:0033119 P negative regulation of RNA splicing
GO:0035062 C omega speckle
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:2.77 TPM:1.54
ORF EntryO_BomoIG100188_complete:A_BomoIG_DN31567_c2_g2_i20
Sequence
(Nucleotide)
TTCCGATCTTTTTTTTTTTTTTAAAAGTCAATTATTTTATTTACAGATTTTTATTACGAC
ATACATCTTGTGTGTATCTCTGGTAGTTTGTTCATGTCAGATAGCTTATTCTAAAAATTT
AATTTCATCCCTATTCAATGGAAGAAACAACTACTTTGTAAAAAATACATGATTCTGAAA
ACTGAGGCGCATCACCCGAATTAATTAAAAATATATACTACAACATTTGTCTGAGATCCA
GAGTATCTACTGTCGTAGTTGAGGGCGGCTCGCACACAAGCTCACGCATTCACATTCACA
TTCACACATCTATTTGTAGATATACCTTTCGGCACTGGTTCCTGCTACCATTAATTTGTT
TCATTAAATTAGTAGGTACCAAATTTTCGACAAATAATGTCAGTCTATTCAATCAGCAAT
AATACTCAGAAACTATAAATCATACTATATTATAATAAATCGAGACGTTAGTCGACGAGC
GCGACCACGACACTGTTTTATCCTTAAATTCTTACAACGATTACTCTCTTAAATTACATT
AAACGTGGAATGGAATGACGCGCCCTCACGGCGGCAGGACGGCAGCGAGGGCGCTCATCA
CCGGTCACTTAACCTGAGTGGTAGTGTATCGTGTGTCGCAGTAGCTAGTAGGGTTGGTGT
CGCTGTGTGGTCCGCGCTCCGCCGCCTCCCCCGCGCGTCTTGCCCCCCTGGTACCCTTTC
CCTCGCGGAGGCTGACGTGCGCCGTACCCGCCCTCGTACCCTCCGTACCCGGCGTAGTCG
TAATTAGGGTATCCAGAGTAATCGTAACCGCCGTAGCCCCCGTAGCCATCGTAACCGTAG
CCCCCGTAGCCGTAGCTGTCGTATCCGCCGCCATAGCCACCCTGACCGTAGCCGTAGCCG
CCGTAACCCTGGTTACCCCAAGGTTGGCCGCCGTATCCACCACGGCCGCCGCGGCCTCCT
CTGGCACCGCGTCCGCCGCGGCCACCTCGCGTGCCTATGCCTCCGGGGCCATCTGGTTTT
GGTGTTGCACGCTTCACATCGACCTCCTTTCCACCAATTGTTCTTTTGGGAGTCTTAAGC
AAATCATTTACAACTTGCTCAGATTCAAATGTGATGAAACAGAAGCCCTTTCTTTGGTTC
TTTGTTTTGTCAAAGGGCATCTCCACTTCTAAGATAGTTCCAAATTCACTGAAGAAGTTT
CTGATTTCATCATCTGAGATTTCACTGCTGAGTCCTCCGACAAAAATCTTCCCATGTCGT
GCTTTAGCCTTCTTTGGGTCTACTTTCTTGTTGTTGATGGTGTGTTCACCAGCAGCCATG
ACCTTGTCTATTGACTCTGGGGCCTTAAACACAATGAAGGCAAACCCTCGTGATCTGCCT
GTGTTTGGATCTGTCTTTACATTAATACTCTCTATTTCACCGTATGCTCCAAAATGATCA
CGGAGCTCCTTATCTGTGGTCTCCCAGCTCAGCCCACCAACAAAAAGTTTTCTGTGAAAT
CAAGTTATATTATTTAGAATGCGAATTAAGAAAAAAGTACGTCTCGATACAGAAACTGAC
TTATCAATTACAATAAAATTTATCATTAAAACTATTTGCAGTACTTGTTTACAGTACTTT
ACAGCTACATTATTATTCAAAACAAACTCCAAGCACTGCAGCAAAACAAATTGTCAACCT
GTAAGTTACAAAAAGTAAAACTGGAAATTTACATTATGAAACAGGACAAACCAAATGATA
CAAGAACGTTAAACTGTCAAAACGCAAGATTTGAAATTGGCAAAAGTGAACGAGGCCCAA
AAGTAAGTGGCCGAAACAATCTAGTCAGTTTGGTCGTAGATTACTTTAGTGTGAGCCCAG
CGGATGGATATATACCATGGCGTCCTCCGGCGGCTGCGGCGGCGGCGGCGCAGGCTCACA
CCTGCAGAGAGACACAGCGTTAGTGCGCCAAACTGACCGCCCTCCGACTACCGATTTAAA
ATCTTGCTACCTATATCACCGGTGAGTAACGGCACCGGCGCAGAGCCCCGCGTGCTCACC
CCGATAGCGGCACGCCATTTTGTGCGACACCCAAATTAATCAATACATTAGCGAAATTCT
CAACACAAACTGCAAAATCACAACTATGCCATCTACGAAACCGTTTAAACCGCGAACAAC
ACACTGTAAAAGCGAAAAAGTATAATTTTGAAAAGATCCGTGTGATTACAACAGATTTTT
GTAAGCCGATAATGGAAAAGCCGGATCGCCGCCATTATGGCGGTCGACGATACATAACTG
AAATGAACTTTACAAAGAGAAATTACTATTTAATATGTTAAAGTGTAACATTTAAGTAAA
TATAATAAGGTTTATTATCTCTGAAATATGTATAAAACTCAAAACAAAGGGAAAATTAAG
TACCTGTCGTCATCGCGTCCTGGGGCCTCAGCACTGTTATGATCTTGCGAATCACCGCCA
CCGTTCTCTGCATTTCCATTAAGCTGGTTGTCGGTGGTAATATCTTGTGCAAAATTATCG
TTATTAGCCATGACTAAAATTACGCCTAATAATTAGAATTAAACTAAAACTATGGTCTAC
ACGCGACCTTCAACAACGAATGCCAAATGCAGAAGAAAGAAACTACGCGATGACGCGATG
AATCGGAGTCGGCGCCAAATGGTTCGTTATGTTGGCTACAGCAGAGAGACGCTTTTTTTG
CATTGAAATTTGCTCCCCTCCCAAAAATCAACCAATCAGGTAACGGCAGAACAAAGGGTC
AATGGCATTTATTCATCGTTAAAAAGAGAGAACAAAATTTTTCGCCTTAACCAAAACGAG
ATAGAATTTTACATTCAATCAATACCAACTACCAACATTACCAAATAACAGCTTGTTTTT
TGAGCAAACAAAGGAAAAATACCATGC
(2907 bp)

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