SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN31548_c4_g6_i4
Scaffold_idBomo_Chr5
NCBI non-redundant
(nr)		Upf3_regulator_of_nonsense_transcripts-like_protein_B_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0006369 P termination of RNA polymerase II transcription
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0031124 P mRNA 3'-end processing
GO:0035145 C exon-exon junction complex
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0051028 P mRNA transport
Transcript
Level		FPKM:32.85 TPM:18.29
ORF EntryO_BomoIG100400_complete:A_BomoIG_DN31548_c4_g6_i4
Sequence
(Nucleotide)
GTCTTCGAACCGTTTGTTTCTTTTACTAGCCTGTGACTTCGACCAAAATGTCAAAAAAGC
TATACACGACGTATGATTATAAAATTATGTTGAGTAATATATTGTTGAGCTAACGAAAAT
TCCATAAGAAATATGACTGAGGATCAAGATGGTAAAGACTCACAGTCAGATTCGGGTTCC
AAGACATTCATCAACAAGAGCAAGGACAAGAAATCTAAGATACATCGTCCGTTGACAAAA
ATAATTCTTCGACGTTTACCGCCCACGATGACTGAGGAAACGTTTTTGGAGCAAGTATCG
CCTATTCCAGAGCATGACTATTTTTATTTTGCCAAACCGGACCCGACTTTGGGCAATAAC
CTATTTTCTAGAGCGTATATCAATTTCGTTAACGTGGAAGATATTTTTCTGTTCCGAGAT
AAATTTGACGGTTATGTTTTCTTAGATGAAAAAGGTGGAGAATATGTAGGCATAGTTGAA
TATGCACCCTTCCAAAGAATTTCAAAGAAAAAAAAGAAGAAAGATCCTAAATGTGGAACA
CTTGAGAGTGACCCAATTTATCAAGAGTTTATCGAGAGTCTGAACAAAGATCCTGAGGTT
GAGAGCCAACCTAAACTAGAATATTCTTACCCAATAAATGATGTTAGTGAAAAAAAAACA
CAATCAACACCTTTGCTGGAATATCTAGCCGCACGTAAACTAGACAAGAGAGGTAGAGAT
GAACGTCGTAGGCGCGATAATGACAAGAGAAAAATGAGAATTGAACGAAAAACAAAGGAA
GGTCCTATCAAGGAAGAAGATAATGAGGATACAGAAGTAAGAAAAATTAAAACCAGAGAA
TCTGAGAAAGAGAAGAAAGATTCTAAAGAAGATCAAACAAAACTGGACGACGGGATGGTA
TTCGAATCTAAATCATACAAAGAACGTAAACCTAATTTAAAAATTGATAAAAAGAAGAAA
TCTGAAAACGATAGAATTGAAAAAGAGGACGAAGTAGGAGATGATCTTGATGGGCAGAAA
AAGGATAAACGCGAAAAAAATAAGATACAAGAATCTCCACGTGAGCAAAAGAGTAAAAAA
TACAGCGACACTAGGAAAGAGAGAATCAAACAAAATGTTTTAATTACAAAATCTGAAAAA
GAGTATGCTCTTTCGAAGCTCATATCTCTATGTCCCAAAAGTACTGCACTCAGTAATGAT
ATTAAACCATTCACTCAACTGCCTCAAGTGAAAACTGATGACTTATCCAAGATTATTGAT
GGAATGGATAAAAAAACAAAGCTTGAAGCAAAAGAAGAAACGACACGAAACTCAAAAGAT
TCAGACAAAGTTGAGACTAAGAGTAATGTACGCAGAAATAGCCTTGACTCAAATAAAGCC
ACAAGCAATGATGAATCTGATTCAAAGAAAACAACCTTCGAAGAAAGACCAAAATCTTCG
GAACGTGAAGGATCGGAAGAGAAAGAAAAATGTGACGGCGAACGTCGCGCTGAACGCAGA
ATAAGAAATAAGGATCGGCCCAGTCTCGTGATTTACCAGCCCGGCATGGGGAAGTTTAGT
AAACAGCGTCTCGCGAAAGAAAAGGAAACGCTCCCGACGAAAGTGAGCGACAGTGAAAAG
AAAGACACTTGAAGATACGGTACTTTTCCCAGTTATTGGACGACTTTAAACGGATATGAC
CTGAAACTGGCACTTGATGCATGTCCACGCGGAGTCACTAAGGGAGGACATGAATATGCC
AAACGAAGGAACAGCTGCTGTCGTGTTCATTGAAGCCTGCCCTAATTGATTTGTTTAGTT
TATATGCATTATAAATGAGTCGGAAATCTTCAACATAAAAATTGAAATATACCATTCCTT
GTTTTTGCCCTCTTGTTTATAGATTATGACCGATTTAGTTCAGTTTGTTTATTTCAATAA
AATATAATATTTTAATTGGGAAAAAAAAA
(1949 bp)

- SilkBase 1999-2023 -