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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN31541_c1_g1_i3
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		PREDICTED:_homeobox_protein_homothorax_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0001654 P eye development
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007380 P specification of segmental identity, head
GO:0007383 P specification of segmental identity, antennal segment
GO:0007420 P brain development
GO:0007422 P peripheral nervous system development
GO:0007432 P salivary gland boundary specification
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007479 P leg disc proximal/distal pattern formation
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0007525 P somatic muscle development
GO:0008134 F transcription factor binding
GO:0009954 P proximal/distal pattern formation
GO:0010092 P specification of animal organ identity
GO:0034504 P protein localization to nucleus
GO:0035282 P segmentation
GO:0035326 F cis-regulatory region sequence-specific DNA binding
GO:0042659 P regulation of cell fate specification
GO:0045664 P regulation of neuron differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048735 P haltere morphogenesis
GO:0048749 P compound eye development
GO:0060323 P head morphogenesis
GO:0090098 P positive regulation of BMP signaling pathway
Transcript
Level		FPKM:0.65 TPM:0.36
ORF EntryO_BomoIG100601_3prime_partial:A_BomoIG_DN31541_c1_g1_i3
Sequence
(Nucleotide)
CCCAGAAGTTTTTTTTTGTTTTAATATTTTTTACACAATTCGTAGCATTCATATGCCGAC
ACATTTTCGTCAGTTTTTCCGTCCGTCACGTCAGCGCGCGATCTTGCATAAAACGGTCCA
CTCATTCTGTACGTATGTATTGGAAAGCAATACAAAATATAATTAAGACGTTTGAACGCT
GACCGACCCAAGATGTTTACAATTTAGTAACTATATTTACAATAACTTGACTCAAAATTA
TAATGTACATACATAATATATAATGAAGAGAAAAATCGAAATAAAAAACATTTCCTTCAA
CTAATCGATTAATACTTAATAACTACTATTTAAGATTTTCCTCTTAATAAAAAATATATT
ACACGCAATTACAGTTAACAATAATAATAACGCGTTCTAGCGCTATGTTCAACACACGTC
TGTCAGTTTTAATGTTCGATGACAGTTTAATAAAACGTCATCTGTCAAATTGACGTATTC
GACAGTCGCGCGTTCAAGATGGCGCCCGATAACACGTTCTAATAGTGAAGTTACAACAAA
ATCTGGTGTTGCGAAAGGAAAATGTATGTTAATACTGAGATTAAATCGAAAATAGAATGA
TTAAAAAAAATACGATGGAATTGTTTTTTTGGCCCCTGAACGTAGAATTGTAGAGGAAAC
CTTTAGATATAAAACTTTAATGTGCGTGTGCAATATACGACGGTAAAATGTAGTCGTCGC
AAAGACGATGAATTTAGCTAGACTAGACAACAGAAGATATGATGAGGTGTCAAAGATTAT
TAATGTCAAACGTCAAACTCAAGGGCCAATGACACGATGTATTTACAAAGTACAAAGTAA
TCAAAATGATGTATGCACGTACCAGTAGTTTTTAATTGTGACACAAATGTTTCTAAATAG
ATAGTTTATTAAAGATCTCAAAAAATTTAAAAAATTGAAGAGGGAAAATTAAATAATCTA
CTATGTGTTTATTTAAAAGTAAATACGAGTTATTTATAAAAGCTTTAGAAAAAAAAATGT
TTAATGGTAGGCTCTGAACTTTCAAATTTTTTAGCACACTCTTGTGTTTGTACTGATTGT
AGGTAGACGAGCAAGCATTCATAGGTCATAGTAGCCTGTAGACATTACAACCTTCAGTCG
CCTTACGACAGGGTCGAGTAAATTGTATACAACGAATAATTCGGGCATCAAACCTGAACA
TATGACTGCTTCGTGGCAGAAATAGGCCCACCTCGGGCACTTGCCCACACAGGCACACAA
TGCGCCTTACCAATCAACGGACAAGCAATTGAAATGAAAGTACACGAGATAGTCATTTTA
GTATCGATATAAAATCTAATTAACTCATTAAACATTTTTATTAAAAATAGCGAAACGATC
GAATGTTATTTGGTTATAATATTTTTGTATATATCTTATTTTTATGGTTCGTTTCAAAAT
TATTTTGAGGCTTCAAAGTCACTTTTTCGTTAACAGCAAGATACCTATCTATTAGGAAAC
AAGTGTGTCACAATAATAATGAATCAACACAAGATATTTCGTTTCATTTTACCCTACCAT
ATAATAAAGCTTGTTTGGATTATTTTATTTGCCTATAAAAACCGCTTTTTGTCGTTAGCC
GCGGTCAATTCTCATATTTTAATAGCTTTCCTCCTCGTATACATAGCATAAGGCAGTAAT
GCGGTGCATTACTTTTAATTTATTTATAAAATTTATTACCAAAAGCTCATAATGGGAATA
TCGATCCGTTCACAAATTTTACAAAAGCTTTCCTTTTCTTACTTTATGGGGAAAAAATGG
GGAATTCGTATGTTATTAAATTTCACAGGCTCTATCAGTTGATCGACATTCACATGATGA
TTGTTCCGTGGTAATTTAAAGTATTAACACTCGCCAGTTTCCATATTTTAATGACTTAAA
GAAATAACATTTAACGTAGATAGCAACATACAGATATGTTGACGACTTTTAGATTTTTCT
AAGTGAAAATATTTACCACGGAACTGGAAAAATTTAGAACGAAACTGCTAAAATTGTCAG
TCGTGACCTACCACACGGTTTGTTAAAAAATCCAGACTAAAAATATTGTTTTTTTTTTCC
ATCATGTTTCACTGTTACATAACACTTATTTTAGAATTGCTCCAGACTTACGAACTGACA
CAGACACGGCACAGAGGCATACTCGATCATAAGAGTTTTGATATACGATATTTTTAATCT
GTACTTCTTAATCTCTTTGTAACACAGAAGGCTGTTACAACGGTATAATCTTTAAGACGA
AAAATATACCTAAAAATCTTTCAATAACATTGTAAAATACATTTTGTGTTCGTATACATT
GGTTACAATTGTGCTATAGTATAGTACATAAAGGCAAAACGTGAAAAATCAATGGTATTT
TCCACATATATAATATTATTTTTTTACATATACAATAAATATATAAAATTCAAAGATATG
TATTTTATGTGTGGGAAATGAATAAAAACTGTGTCATAAGAAATGTGGATAATAAATTGA
CATTCCTCTAGAAGTACGATTTGAGCTTGACAATTTATTAATAAATGATTAGATAAAGAT
GCAACACTCTGGAGACATGTAACGTTTATACTATACGACGAGACGTGCTCGTCAAAACGG
AACGAAGTCGTCAGTCGGGACTGACGATCGATTGACCTGCAAACTTAGCCGCCTTGATGG
GCACGTCTCGGCGCTCGTCACGGACATGGTTTTCGAAAGAAATCATAATTAGTTACACGA
TTCGTTTACAGAACAGAACAGAACAAACGCGTCGTACACCTTCCCGCCGACATCAAACCG
ATTGCTTCAAGTGATAATTACAACTTACAACTAATCAATTATTTATTTATATTTACGTAA
TAACAATACACATTTAGCTATAAATATTTATAAGATAACTATGAAACCACATTATTGTTA
CAGACGTCGACTCCTCGCAGTTCCCGCGATGGTGAAACCTCCCGAGGTGTGCCGCACCAA
TCAGCGTCCATGTCACTTCAAGTTTACATTTACAAAGATGTTTTTTTTTTTTTCTCTCGT
TAATTTTTAATATTACAGTTGACTTTTATCTTAATTTAGGAGATCGTATACTGTTTCAAA
TATTACAAAATGTTTCGCGTTTACGTTATCCTTTATTTATTTATTTATTTACATATTTTA
GCATAGTTCTCCTGTAAGTGTGGCGTGTCGCCGTCGCGTTGTTGCCGCGTCGGTGTCGCG
ACGGTGTCGCGCAGGTGTCGCGCGCGGCCTCTCTGTATCGTGTGCTGGATGCTCACGACC
CTCGTCACCACCGGGAGTCGGAGGGTGTGACTTGTATTCATATATGTACAAAGATGCTCG
GTGCATTAGAGGTGGTGTCCGTAATACTCGGCCGGGTAGTGCGCGTAGCCCTGGTGGAAG
GCGGGGTCTGTGGGCGGCCTGTGCATCATCTGCTGCCCGTCCATCATGTAGCCCATGGTC
GCCTCGGGACTGTACGCGCCGCTGGGGCCGGCGTGCGGGAACACTGCTCTATTTGATTGG
TCGATCATTGGTTGGACTATCCTACGTCTCGCGTTTATGAACCAGTTATTTACTTGTAGT
ATTGTTAACCCTGTGTCCTGTGCTAATTGTTTCTTTTGGTCTTCAGAAGGGTACGGATGC
GTTAAATGTTGGAAGAGCCACGCTCTCAGGATATTTGTGGCGACCTTCGGGAAGATTCCG
CGCTTCTTCTGGTTCTTTTTACCGTTCGTGTCATCGTCTTCCTCGCCCGTACCCTCCCCG
GAGCCGATGCTGGCGTTACTCGCGTCACCTGGGTACTCACCGGGGCTGCCCAAGAACACG
GAGGAGTACACCCGCCGCGCCACGTCGGGTGGGGATGACCACTCGCGCCGCGACGG
(3896 bp)

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