SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN31385_c1_g7_i1
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		5'-3'_exoribonuclease_2_homolog_[Bombyx_mori]
Ontology
GO:0000738 P DNA catabolic process, exonucleolytic
GO:0001147 F transcription termination site sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004534 F 5'-3' exoribonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006351 P transcription, DNA-templated
GO:0006353 P DNA-templated transcription, termination
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0007283 P spermatogenesis
GO:0008409 F 5'-3' exonuclease activity
GO:0016020 C membrane
GO:0016049 P cell growth
GO:0016070 P RNA metabolic process
GO:0016235 C aggresome
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:32.15 TPM:17.90
ORF EntryO_BomoIG13384_complete:A_BomoIG_DN31385_c1_g7_i1
Sequence
(Nucleotide)
CGAAATAGTGTGTTCTTAGTGCTATCCTGCTTTGTTTGTCAGCTTTCTCTCTCTACTTAA
AATGGCACCTGCGTCGATTTGTTTGTGTTGAATACGTGACAAATAAAACACAAAAAACAT
TTAATCACCATCAATAAAAATTAAGACGAGTGTTACATAATGGGAGTTCCAGCGTTCTTC
CGCTGGCTCAGCCGAAAATATCCAAGTGTAATAGTGGAATGTGTTGAACAAAAGCCAACC
GACGTAGATGGCCAGTTAGTATATGTAGATTCCTCCCTCCCTAATCCAAATGGAGTGGAG
TTTGACAATTTATACCTGGACATGAATGGTATCATCCATCCATGCACCCATCCCGAGGAT
AAACCAGCACCAAAAGATGAGGATGAGATGATGGTTGCCATCTTTGAATGCATTGACAGA
CTTTTTCGTATTGTGAGGCCTAGGAAACTGTTGTATATGGCTATAGATGGAGTGGCTCCA
AGAGCTAAAATGAACCAGCAACGTTCTCGACGTTTCCGTGCGTCCAAAGAAACCCAAGAG
AAGATTGAGGAAGTGGCTCGCATCCGTAATGAACTTCAGGCTAAAGGAGCATACTTACCA
CCAGAGAGGCCTAAGGAAGCTCACTTTGATTCTAATTGTATCACACCGGGGACACCGTTC
ATGGACAGACTGAGCAAGTGTCTGCATTATTACATACATGACAGATTAAATAATGACCCC
GGATGGAAGGGCATTAAGGTTATATTATCTGATGCAAATGTTCCTGGGGAAGGAGAACAT
AAGATTATGGACTACATTAGGAGACAAAGAGCGCAACCAGACCACGACCCAAACACTCAG
CATGTTTTGTGCGGTGCTGATGCTGATTTAATCATGCTGGGTCTGGCCACTCACGAGCCA
AACTTCACTATCATCCGTGAGGAATTCAAGCCTAATAAACCGAGACCCTGTGATGTTTGC
GGGCAACTTGGTCACGAAATGAAGGAATGCACGGGAACGAACCCGGACGCGTCAGTCGTT
CGTTCCGATCCGGCGTTCGGGAACCAGGACAACTTTATATTCGTCCGGCTCAGCGTGCTC
CGGGAGTATTTGGAGAGAGAGCTGCAGATGCCGAACCTTCCGTTTCCGTACGACTTCGAG
CGCGCCCTGGACGACTGGGTGTTCATGTGCTTCTTCGTGGGGAACGACTTCCTGCCGCAC
CTGCCCAGCCTCGAGATCCGCGAGGGGGCCGTGGACAGGCTGGTCAACTTGTACAAGAAA
TGCGTTTACAAGACCAAGGGCTGGATAACCGATTCGGGAGATGTGGAGCTGGACCGCGTG
CAGGTCATAATGACGGAGCTGGGTCACGTGGAGGACGAGATATTCAAGCGAAGGCATCAG
AACGAGCTGAGCTTCAGAGCGAGGGACAAAGCCAAGAAGAAACAGCAGCGGGTCAACTTC
GAGCTGCTGGAGAACACGCAGTTTGCCCCGGAGGCGGTGGGGCGGGGCGCGGCGCCGCTG
CGGGACGCGCGCCGGGCCGCCGCCGACCTGCGCGTCGCCGGCATGCACGCCGCCGCACAG
AAGGAGGGCGAGAGTCGCAGCAGGAAGCGGTCGGCGGCGGCGGCGGGGCTGGACGAGGAG
GAGGAGGAGGACGAGGACAAGCACGACGAGGTCCGGCTCTGGGAGGAGGGCTTCAAGGAG
AGATACTATGAGAGCAAGTTTGAAGTCACCCGGAACAATCTGGAGTTCAGGTACCGTGTG
GCGCTGCAGTACGTGCGGGGCCTGTGCTGGGTGCTCCGGTACTACTACCAGGGCTGCGCG
AGCTGGAAGTGGTACTTCCCGTACCACTACGCGCCCTTCGCGTCCGACTTCGTCAACATA
TGCGGCCTGTCCACACAGTTCGAGAAGGGAACTCAACCGTTCCGTCCGCTGGAGCAGCTG
ATGGGGGTGTTCCCGGCCGCCAGCGCGCAGCACGTGCCGCGACCCTGGGCGCGCCTCATG
AGTGACCCGTTCTCTCCCATCATCGACTTCTATCCGACGGACTTCAAGATCGACCTGAAC
GGCAAGAAGTTCGCGTGGCAGGGCGTCGCCCTCCTGCCCTTCGTCGACGAAAACAGACTC
TTCAAAGCCCTGGAGCCCTACTATAAGGAGCTGACGCAAGCTGAAATACAACGGAACATA
CGAGGCCACGACCGACTCTACGTGTCGACCGGGAATCAAAGCTACGAATACATCCTGGGG
CTGTACGAGGAAGCTCAGCAGGACCTCCGAAAGCTCATCGAGGACAAACAGAAGTACCCC
TACCAGTCGGAGGGGGTGAGGGGGAACGTGATGCTGAGCGCTGACAACGTGCTCATTGGG
GGACAGCTGCCGTCCCCGGTGGTGGGTCTGGCGCCGGTGCTGGGTAACCGCGTGGTGGTG
GTGCGGTTCGAGGACCCGCAGTACCCGGACGAGTTCGTGTTCCCGGCGCGGCGGCTGCAG
CGCGCCACGGCGCCGCCCCGGGTGCTCAAGCCCGGAGCCCTCGACCAGAGGGAGCACCGG
AACTGGAGACCGCAGATAGGCATGGTGCGCTCCAACACCGTGGCCAGTCTGGAGTCGGCC
GGGCGCAGGATGCTGGGACATCATCTGCCGAGGGAGAGGGCGTACGCCTCGGTGCCGCCC
CCGCACAATCCGCAGCGAGAACGCTCGCAGTCATTCGGACCGGCACGAGGCGGCTATGTA
CCACACAATCCTAACCAGTCATACCAGAACTACAATCGGTCCGGTAATTCAAGTCAATCG
TACGGAAGCCAGAACCACTCCTACGGGAATCAGAACCAGTCTTACGGAAACCAGAACCAT
CCGAAGCAAGGCTACCATCAAAACAGAGGTCAAAATCAGGGCTACAACAGCTCCAACCAG
GACTACGGTAACCAATATAGCAACAACCCTGGCTACAGTACAGATTATAACAATCAGGGC
CAAGGCTACAACAGCTACAAAGGAGGTAATAATTATAGCAGCCATCAGCAGAATAAGCAG
GGGCAGGGAAGATGGCAGCAGAGAGGCGGTGGAGGGGCAGGAGGGAGTTGGCGGTAAAAC
TGCAAATTTGCACTCGTGACCAAACGCAATCAAAGCCCGCCGCGTATCCAAAGGATCGGT
AGTGGGCGCGTGCCAAACTCTTCAATTTTCTTGAGAGACTTTTGTACGCAATATGACGTG
CTCACGAGTGCTCATCAACTAGGCGGTAACATTACATTGATATTGTTAACAACCGGAGTG
GTCACACGTTAAAGTAAGCAAAAACTATTCAGGTTCAACGCGCCGTCTCTAATATAGAGT
GATACAGATGGGCAATCTGCTCGTTGTAAAATATAAATAGTCGGATTTAGGGCAGAAGTT
AAATACAGTAGAAACAAAAGCTAAAGGCACTGTATGTAATTTTTATGTATCTAGAAAGAG
TCGAATGTGCTATGAAACAAGTCAATTCCATTTTTATTGATTTTAAAACGATTCACGGAC
TGTGTTTCACGGTTTTTTAGTATTATAAAGACCAATAATAATTATGTTATAAAAATTTAA
TATTTACAAGATTTTTTTGTTTATTATGCATTGCTGTTAGAATGTGACAAACGAATTGAA
TTGTGACAATGAGTTGTTTCCTGGTGTCTGAGATTCGATCGACCGAAATAGTGTTTCTAT
CTAGGATGACTTTTGATTCTGGAAGTTTGCGGAAGGTTTTACACGTCCGGAATGAACACT
TGTCCCAAGTATAGTGGACTTCTGGTTTTCTAGAAAGTGGTGTGCGTATGAGCCAGGAAG
CAACACTTGGGAGCTGGGCCTTGGTTACTCATGATACCTTATTAGCAATAACTCAGACCT
ATCTTAGCTTAATAAACCCGGTCAGAGCTAGTTCACAGGATGTGAGTTGTTCATTATTGA
AAACACAGACTGATCGTTTTTCCAAAATATATATTTTCGTCATCACACCTAACTTAAGTC
TTTGAGTTGGAAATCGCAATAATATAAACGCGATATATTTTGTCTTTGTGTTGATTATCA
ACTGGCACACTGATCGCTGATCTTAATTAAAAAAAAAGAATGAAGATAAAAAAAATTTTA
TTGGTAATAAATTTTTGGAATAATTTTAATTAATAATGGATATTGCTCAAGTATCAATTA
TTAATAAACAAATATATATTTATTTATTTAATAAATATGTATTTATTTATTACATATTAG
ATAATTGAGTCCGTTAAATGTATTATTGACTTACTTGGCTATTTTTGATTGTGTTAATAT
CGAAAGGCAAACTGCAATATAAAGTGCTATATATTGATAGCAAAATGACTATAAATGATT
TTTGATTAGTAAGACATGTCCGAAACAATAATAATAAAACAATAATAAACCCTGAAAAAA
AAAAAAAAGATCGGAAG
(4397 bp)

- SilkBase 1999-2023 -