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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN31381_c3_g5_i2
Scaffold_idBomo_Chr24
NCBI non-redundant
(nr)		RNA_polymerase-associated_protein_Rtf1_[Bombyx_mori]
Ontology
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007219 P Notch signaling pathway
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0035327 C euchromatin
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0051568 P histone H3-K4 methylation
GO:0051571 P positive regulation of histone H3-K4 methylation
Transcript
Level		FPKM:0.45 TPM:0.25
ORF EntryO_BomoIG10991_complete:A_BomoIG_DN31381_c3_g5_i2
Sequence
(Nucleotide)
CCACCCTGTACAAGACAGTTCTCCTTACTTCTACCCTCCATAATTGAAAACAAAAACATG
TCATATCAGGTCTGTGTAGTGTAACAACAAAAAATTTCATATACTGTCTGTGTCTCAGCT
GCTGAAGCAGAAGCAGAGAAAGAGAAGGAAAAAGAAAAAGAGCCCCAGAATGAACCAGAA
GAGACGCCTCCTAGTCCTGGAGAAATACTGGACGAAAGTAAAGATATGGAGCCCTCAGAG
AGATCAGCCTCTCCGCTGTTTGGCTGTAAAACAGAACGGAAACGCGCCGTGGATGACAAA
CGACAGAATGCTATGGCCGCGTTGCGAGCTCAAAGGGCTTCGAGAGTGCAAAGGGCGCCG
GCTGACGCTGAAGCAGATTTAATAGGCGGCTCGAGCAAACAGACTGTGAAACTTAAAGCT
TCAGATATTTATTCGGACGACTCCGGCTCTGAATCTGAAGATAATAAATCAGCTCGGAGA
AGTTCCACGAGCTCATCCTCGTCCGGTGCAGAAGAAGAAGAGAGAGAGAAGAAACGACAA
GAAGTGGAAGTCAGATACGCCGACACCAGGGAACAAATCAACAAACTGCGCTTAAGCAGA
TTCAAACTGGAAAGACTGGTGCACTTGCCGTTTTTCACTCGTGTAGTCACAGGGTGTTTC
GTCAGGATCGGCATAGGGAATAACAACGGGAACCCTGTATACAGGGTGGCAGAGATCATA
GACGTGCACGAAACTGGGAAGGTTTATAACTTGGGCAACACAAGAACAAATAAAGGCTTC
AAATTGAGGCACGGAACTCAGGATAGAGCGTTTAGATTGGAATTCGTCAGTAATCAGGAA
TTCACGGACGGAGAATTTCACAAATGGTACAAAGCTTTAAAGGATGCGAACAAGAAGCCG
CCCACCATGGACTTCGTCAGGAATAAGATCAACGAAGTCAAGCAGGCGCTCATGTACGAA
TTTAAGGAAGAAGATATTGAGAAAATAGTGGCAGAGAAGGAGAGGTTCAGATCTCACCCG
ACCAACTATGCGATGAAAAAGACGCAGCTTATGAAAGAGAGGGACGTGGCACAACTGAGG
GGTGACGATGAACTGGTGATGGACCTAAACTCCAAGATCGAAGAGTTGGAGGAGCGTGCC
AACCAGCTCGACAAGACGCGGACCTCGTCCATACAGAGCATCTCGTACATCAACAACAGG
AACCGGAAGCTGAACGTTGAAACCGCCGAGAAAGCTATCATGGAGGAGGTCAAAGCGAAT
AAAGGAAAGAAAACAGACGACCCGTTCACGAGGCGACACACCAAGCCCGTCATGAACTTT
AAATCACAAAGCAGCAGGAGTCAGGAGCTAATAAGCAACCAGCAGGCCGCAGCTGTGGAA
GCCCAGATACAAATTGAGGAAGAGAGGATGGAGAAGGAGAAAATTGAGAGAGATAGACTT
GAAAACCACGAGGAGGCGAAGAGGTCCCGCGGCGAGCACCCCACGTCCAGCGACACCAGC
CTGTACTCGCTGCACGACTTCGAAATTAACATAGACCTAGATCTACCTGCAGCAAAATCC
GTGTCGAGCCAGCCGAAGCAGGTGACGACGAAGGTCAAGGAGACGGGGCCCAAGCGCTCG
CTCAACCTCGAGGAGTACAAGAAGAGGCACGGGCTCATTTGAGTGTCGCCATCCCCCCGC
GGCCCTCCGCCCGGCCCCCCGACTGGGAACCATCCGGTGTGCTTTGAATTCGTGAAGATA
ATTAATACAAAAGTGAAGTTCAACTGTGGAAGTGTATCAGAGCGAAAAGCGCGCGAGTGT
TGCCAGGAATTTGAAGTTGTGTTTGTGCAGTGGCAACACTGAACTCATTGCAATAGTGTC
GAGTGATATTGAGCCTCTGTGAAGTTAATTTTAATCGATGATTGTGCGAACAAATATACA
TTAGGACTCGAATGATACGTTGATTTTAATGAAAATGTTTGAGTTATGGCGTCGTGATCT
TACCGCCTATGGGACTTACATAACGAACCTACCTTACTATAGACACACGTACTCATGTTA
CTTATTGCTCAGCCAAGTAACGTGCTCACGACTCGTCTGGCGCTAAGTTGTTCGTGTAGC
AACGCGAGCGCCGCCAGCCGCCTTGAGGCTTGAGGTCTGCGTCTCAACAGTCATTATCAA
TTGAGGTTACCGCCCCCGCTCATTGCTCATGCATCATCATATCGAGGGTTGATAATTCTA
TTTAATGAATCAATTTCTTGGTATGGAGGCGTCTTCAGTAAACACGCGATCGAAATACAA
ATTCCACCTTTAGAAATAAAGTGACTTAACAAGTTCTTTTAAAGAAAATAAGTTTTATAC
TTTGTACGACTTACAAACAATAAAGTCGCTGTCAAACCAAAATCTGCTATGTAAATTTTA
TATGAAGTTGAATTTTTAAGAACTATATCAAATGAAAGCCGTAAATTAATATTAAAGCTA
TAGACACAAC
(2470 bp)

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