SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN31367_c1_g2_i13
Scaffold_idBomo_Chr13
NCBI non-redundant
(nr)		synaptotagmin-5_isoform_X1_[Bombyx_mori]
Ontology
GO:0005509 F calcium ion binding
GO:0005544 F calcium-dependent phospholipid binding
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006906 P vesicle fusion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017156 P calcium-ion regulated exocytosis
GO:0017158 P regulation of calcium ion-dependent exocytosis
GO:0019905 F syntaxin binding
GO:0030054 C cell junction
GO:0030276 F clathrin binding
GO:0030672 C synaptic vesicle membrane
GO:0031045 C dense core granule
GO:0031410 C cytoplasmic vesicle
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0045202 C synapse
GO:0046872 F metal ion binding
GO:0046982 F protein heterodimerization activity
GO:0048471 C perinuclear region of cytoplasm
GO:0048488 P synaptic vesicle endocytosis
GO:0048791 P calcium ion-regulated exocytosis of neurotransmitter
GO:0055038 C recycling endosome membrane
Transcript
Level		FPKM:0.14 TPM:0.08
ORF EntryO_BomoIG12278_complete:A_BomoIG_DN31367_c1_g2_i13
Sequence
(Nucleotide)
GTCGGGGTAAACAAGTCGCGTTAATGATAAGGCAAACGACGCCGCCGCCCAGTCGCGCGC
GCCCTCCCGCCCTAGGCACGTCTCTGCTAAGCATCAAGAAGAGCAGATTTTATTTTTTTA
AATATTATTTCTCTCGATGGATAAGCCGTGGGCAGATCCACTCGCACCCGGCGGGACGCC
ATGGGAATACGATTACGAAGAAATTCACAAAAACTTCGAGACTACAACTATAGGAAGGGT
AGCTAGACCTGAAGCCATGACAGCTCCGCGTGGGGTCCCCGCCTGGGACGAATACCATGG
TAATGCGTTGAGCGCTGCTTTAGGAGCTGTGGGGGGCGCCACGACCGTACTACTGATTGT
AGCCGTGGTTCTGATGTGGAGGAAGCCAAGACGACGGCAATTACCGCTCTTAGCGCCGAT
GGACATTGGACATAACGAGATGTTGATTTCGAAAGAGCAGTGCCGTGTTCAGCCGTTGAA
TTCGGACACTCGGGCTGCAACTTCTCTACCACATGCAAGACTCACCAGGACACCATCCAT
ATCATCTCAAAGTAGTTTGGACAGTGCCACTTCAAGAGCCACTAGTCATCGTGGTTCGTC
GCCTGCAATTCGGACGTTCGCTCCTGACGGTCGTACTCTTGAAGCCGGAGGTGTGAACGT
GCCGAGATCACCGTCGCCTTTGCGTGCTGCTTCATTGGACGTCCGTGCAGCTCCTCTAGC
TCATGGGTCACTAGCATCTTTGGCAGACTCGCCAGCGCCACCAAGCCCGAGACATGCCCC
GCCTAGATGTCTGTCGCCTTTGTTGATGCCACCAAGACGAATAGACCGGAGCAATTCGCT
GGTGGAGAGCAGCAGCGGTGCAGGACCACTGAGTCCAGGAGCCGGAGCAGCTGTTAGTGC
TCTGGGAGCACTTCAACCTGATCTCTACACTAAGAGGGAGGCGCCTCTCGTGATAGAGCT
CGAAGGGCTGGGACCTTCGCTTGGAAGACTACACTTACGCTTGAAATATGACTTCGATAG
ATCCGATCTGGAAGTTCATCTTATTGAAGCCCATGACCTGGCAGGATACGAAGCAGGCGG
GTTCAATGACCCCTACGTCCGCGTCAGTCTCCTACCTGAAGTAGACACCCGCGTACGACA
AACCCCAGTCCACAGGAACGAGGCGAATCCGTTCTTTGACCAGCATTTCAAGTTTCCCGT
CTCGCATGATGAGCTCAGCGATAAAACTCTCCTGCTCCAAGTGTTCGATTATGACAGATT
CTCCCGTAACGAAGTTATGGGTTCGGCTAAGGTTCCGTTATCGCGGGTGGAAGTAGCCGG
TGGGGCTGAGGTGTGGGCGGAACTGTCTCGTGAACGACGTCCCCCTGAGGAGCTACAAGA
ATTGCTGCTGTCATTATCTTATCTACCCTCCGCCGAGAGGCTTACCGTCGTTGTGTTGAA
AGCTAGGAATCTTCTACCGCCACAAGAGGGGAAAGAAGCTTTGGATGTATATGTCAAAGT
GTATTTACTGGTGAATGGCAAACGAGTGAAGAAGAAGAAAACTAACAGGAAAGAGATAAA
TAATCCAGTGTGGAATGAAGCCCTTTCGTTCAGTCTACCCTCAGCTAATCTTCAAGAGGC
TTCTATTGAGGTGTGCGTGGTGAGCGGCGGCAGTAGTGGTCTGGTGGTGGGGTGGTGCTG
CGTGGGCGCGGCCGAGCCCGCTGCCGAGGGCCGGCACTGGGCACAAATGGCGCACGAGAC
TCGCAAGGCCGTCGCCATGTGGCACACGCTCAGATAGACTCACAATAAAACATCTCTTAC
TGCACTTCACTACTCGTTAGTTTACACATGGACACTGTGAGCTTTTTTTTTCTAGAAAGA
ATATTGCAGGGCACGATGGGCCTCGTCCAATACCACGAAAAATCTTCCCATTGTTCGTAC
TTCAAAACTTAGACATTTGAGAGAACTGCTTTAAGGGGTTTCTGTGTACAAAGCGCACAA
AAAAGATCTACTCTAAAACGGTTTTATAAAGAGCCCTTTTTTTTAAAGCTGGGGAATCTA
TTTACGGATACCCGGTCGAGGGGGTAACGGACCGGGTTGTCGGACTACAGAGCCTCCAGA
GAAAGGGGGGGGGGTGAACAGAAGGACCGGTTCGGGCGCCCCCGCACCCGATACTCGATT
ATAAAGAGCCCTGCTAGACTACTACTACTAACTACTGACTGACTGATTCTACGTTATCAA
CGTTAGCAAACTACATATTTCTGCCGAGAAGAAAACGTTCCGGTTTAGAGTCTATCCCAT
ACAATTAATGCTAGTTCTCATGTCTCAATACTGCATACACATGACGTCATCTAGTCTTAT
CAAAACACCCTATCCACTTAAATCTTTGTTAAAATTAAAATCTAATTACTGTTGCTGTTT
ACCAACTTTACAAAATGAAACTATACGCAACATCATTGTGCGTGACGCCATTCGTGGCCA
AAATAAGCAATGAGCTAGCCGTAATATGATGGTGAAGCTGCATTGCATGAATATTTCGGC
AGTGGTGTTTTGATTCTGCTGATGGATGGTAAATTCTTAGAATATCTATCAAAACTTTAC
TAGGTACCTAAGACATCATTCGTTGTGAATGTTAAGTGTTCGAATTTTCAGATTTATTAA
TTTATAAATCACATAATTGTTATATCGCTTTTTATCAAAACGTTATTAATTTAAATATAC
CAGTTTTTGTAGTGAAGTGCAGCAGTAGAGTTTACAATAATAATTATTATTATAAAATGT
ACTTCTAATTAATATTAACTCTTCACAAACATTGACTATAACACACCCTGCCTTCCTACA
CTTCGGATAACATCTGTGGGCACATTAGTCCTAATCAAATATTAGATAATATAAAATTTA
TCGAATTTATCTATCATAATGAAATATTATTAAATTTATTGAAACACCAAAGAATTCTTA
TGAATTGTTATATTTTTATTGTATTACATATATTGAAAGACATTTGTTAAATAATCGATT
AGATTTGTTATTTCAAGAATCGAACAGAAATGCGTTATTTACAAGTGCCCACAGTTTTCC
TACGATATAATAAATAAATTTAGCTAAATACCTATCAGTAGTTGTTGATGATAGTCCCCT
CTTGAACGGGGCTTTTTATGAATTATATCGAATTTTATTCCAATATAAAAAATATACGTA
CCTATTTTATCTAATTATATGTATCAGTATGATGAGAAATGTATTTTTCATTTGTATTTT
CTTTACAAGTCGTCGTCAATAAAATGTTTATTTGTAAAATTGAAAAAAAAAAAA
(3294 bp)

- SilkBase 1999-2023 -