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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN31365_c2_g3_i5
Scaffold_idBomo_Chr17
NCBI non-redundant
(nr)		LOW_QUALITY_PROTEIN:_DNA-directed_RNA_polymerase_II_subunit_RPB1_[Bombyx_mori]
Ontology
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
Transcript
Level		FPKM:14.99 TPM:8.35
ORF EntryO_BomoIG12852_complete:A_BomoIG_DN31365_c2_g3_i5
Sequence
(Nucleotide)
ATCTTTTGCCGTCAAGATGGCGACGGCGAATGATTCTAAGGCGCCTTTGCGTCAAGTAAA
AAGAGTACAGTTTGGAATACTATCCCCAGATGAAATTCGACGCATGTCAGTTACTGAGGG
AGGGATTCGATTCCCGGAGACCATGGAAGGTGGAAGACCGAAGCTTGGCGGTCTTATGGA
TCCTCGACAAGGGGTAATTGACAGAAGCTCACGGTGTCAAACGTGTGCTGGGAATATGAC
AGAATGTCCAGGACACTTTGGGCACATTGATTTAGCTAAACCAGTTTTCCATATTGGTTT
CATAACAAAAACAATAAAAATACTCAGATGTGTATGCTTTTATTGTTCAAAGCTGCTTGT
CAGCCCTACAAATCCAAAGATAAAAGAAGTTATAATGAAATCCAAGGGCCAACCCCGCAA
ACGGTTGACCTATGTTTATGATCTGTGCAAAGGAAAAAATATATGTGAAGGTGGTGAAGA
CATGGATATTGGGAAAGAAGGTGAAGAAGGTAAAAGAGGATCTGGTCATGGTGGTTGTGG
GCATTATCAACCCTCTATTAGACGACAAGGTCTAGAGCTCACAGCTGAGTGGAAACATGC
TAATGAAGATACACAAGAAAAGAAAATTTTTGTCTCTGCAGAAAGAGTATGGGAAATTTT
GAAACATATAACAGATGAAGATTCATTTATTTTGGGTATGGATCCAAATTTTGCAAGACC
AGATTGGATGATTGTGACGGTTTTGCCTGTCCCTCCATTGTGTGTTCGTCCAGCTGTTGT
TATGTTTGGCTCTGCCAAAAATCAAGATGACTTAACCCACAAGCTAGCTGATATAATAAA
AGCTAACAATGACTTGGAAAAAAATGAGCAGTCTGGAGCTGCTGCTCATGTCCTTGCAGA
GAATATAAGAATGTTACAATTTCATGTTGCTACTTTTGTTGACAATGACATGCCTGGTAT
GCCAAAAGCTATGCAGAAATCTGGGAAGCCCTTAAAGGCTCTCAAAGCCAGATTGAAAGG
AAAAGAAGGAAGAATTCGAGGAAATCTAATGGGGAAACGTGTTGACTTCTCAGCTAGGAC
AGTAATCACACCTGATCCAAATTTACGTATAGATCAAGTTGGGGTTCCCAGATCAATTGC
TCAAAATATGACATTCCCAGAGTTGGTGACTCCATTTAATCTTGATAGAATGCAAGAACT
TGTCCGAAGAGGAAATGCACAATACCCTGGGGCAAAGTACATTGTAAGAGAAAACGGAGA
AAGAATTGATTTAAGATTCCATCCTAAATCTTCAGATTTACATTTACTCTATGGTTACAA
AGTAGAAAGACATCTAAGAGATGATGACCTTGTTATATTTAATCGTCAACCAACTCTTCA
CAAAATGAGTATGATGGGTCACAGAGTTAAGGTACTTCCTTGGTCAACGTTTCGTATGAA
TTTGAGTTGCACATCACCTTACAATGCTGATTTTGATGGAGATGAAATGAATTTGCATGT
TCCTCAATCAATGGAAACAAGGGCTGAAGTTGAAAATATTCATATAACACCTAGACAAAT
TATAACTCCACAGGCTAATAAACCTGTAATGGGTATTGTGCAGGACACATTGACTGCCGT
TAGAAAAATGACTAAGAGAGATGTTTTTTTAACAAAAGAACAAGTAATGAATCTTCTTAT
GTTTTTACCTACATGGGATGGTAAAATTCCTCAACCTTGCATTTTGAAACCACAGCCTTT
ATGGACAGGTAAACAAATATTCACTTTAATAATACCTGGTCCTGTTAATATGATTCGAAC
TCACTCTACTCATCCTGATGAAGAAGATGATGGTCCTTACAAGTGGATTTCTCCAGGAGA
TACCAAAGTTGTTGTAGAACATGGAGAACTACTAATGGGTATTTTGTGTAAAAAGTCGCT
TGGTGCATCTGCTGGCTCTCTGTTGCATATTTGCATGTTGGAATTAGGCCATGAAACTGC
TGGACGATTCTACGGTAACATTCAGACTGTCATTAATAACTGGCTTCTGTTGGAAGGTCA
CTCAATTGGTATTGGTGACACTATTGCTGATCCACAGACATATCAAGAAATTCAGCGTGC
AATCGTAAAAGCTAAAGATGACGTAATAGAAGTCATTCAGAAAGCCCACAATATGGAATT
GGAACCCACACCTGGTAATACACTAAGGCAGACCTTTGAAAATCAAGTGAACCGTATCCT
CAATGATGCTCGTGATAAAACAGGTGGATCTGCTAAGAAATCATTAACAGAATACAATAA
TCTCAAAGCTATGGTAGTTGCTGGCTCGAAAGGTTCAAACATTAATATTTCACAAGTCAT
TGCTTGTGTAGGCCAACAGAATGTTGAAGGAAAACGAATCCCATTTGGATTTAGAAAACG
CACCTTACCCCACTTTATTAAAGATGATTATGGTCCTGAATCCAGAGGTTTTGTTGAAAA
CTCTTATCTAGCTGGTCTGACTCCTTCAGAATTCTATTTTCACGCCATGGGTGGACGTGA
AGGTTTAATTGATACTGCTGTAAAAACTGCTGAAACTGGATACATTCAACGGCGTCTCAT
TAAAGCCATGGAGTCTGTAATGGTCCACTATGATGGTACAGTTAGAAACTCTGTTGGACA
ACTTATTCAATTGAGGTATGGTGAGGACGGTCTCGCAGGAGAGACAGTAGAATTCCAGAA
CCTGCCGACTGTTAAATTGTCAAATAAAGCATTTGAAAAGAAATTCAAATTTGACTCTTC
CAATGAGAGATATCTGAAGAGAATTTTCAGTGAAGACATAGTCAGAGAGCTAACAGAATC
TGGAAGTGTCATAGCTGACCTTGAAAGTGAGTGGGAACAACTTTCTAAAGACAGAGAAAC
ATTACGTCAGATTTTCCCAACGGGAGAATCTAAGGTTGTATTGCCATGTAATTTCAAGAG
AATGATTTGGAATGCTCAGAAAACATTCCACATAAACAAGAGAATACCAACAGACTTAAG
CCCTATCAAAGTTATAAAAGGTGTATCAGACCTTCTAAAGAAGTGTGTCATTGTAGCTGG
TGATGATCGTTTGTCTAAGCAAGCCAATGAGAATGCTACATTACTTTTCCAATGCTTAGT
GAGATCAACACTTTGTACAAAATTTGTATCTGAAGAACATAGATTATCTAGTGTAGCATT
TGAATGGCTTATCGGGGAAATAGAGGCAAGATTCCAGCAAGCACAAGTAAATCCAGGTGA
AATGGTAGGCGCTTTAGCTGCTCAATCACTTGGTGAGCCAGCTACTCAGATGACATTGAA
TACCTTCCATTTTGCTGGTGTATCATCCAAAAATGTAACACTTGGTGTGCCTCGTCTGAA
GGAAATCATCAACATTTCTAAGAAACCAAAGGCTCCTTCTCTAACTGTATTTTTGACCGG
TGGAGCAGCCAGAGATGCCGAAAAAGCCAAAAACGTTCTCTGTAGATTAGAACATACAAC
TTTACGTAAAGTTACTGCTAACACGGCTATTTATTATGACCCTGATCCTCAGAATACTGT
TATTGCAGAGGACCAAGAATTTGTCAATGTTTACTACGAAATGCCTGACTTTGATCCTGC
GAAAATTTCGCCTTGGTTATTGCGTATTGAACTGGACCGTAAGAGAATGACCGACAAGAA
ATTAACAATGGAACAGATTGCTGAGAAAATTAATGCTGGTTTTGGTGATGATCTCAATTG
TATCTTCAATGATGACAATGCTGAAAAGTTAGTTTTGCGAATTAGAATCATGAATAATGA
AGAAAGTAAATTCCAAGATCATGATGAAGAGACAGTAGACAAAATGGAAGATGACATGTT
CTTAAGATGTATTGAAGCAAACATGCTGTCTGATATGACTTTGCAAGGCATTGAGGCTAT
TGCAAAAGTGTATATGCATTTACCACAGACAGAAGCTAAGAAACGTATAACTATAACTGA
ACAGGGAGAGTTCAAAGCTATAGCAGAATGGTTATTGGAAACAGACGGCACATCTCTTAT
GAAAGTGCTCTCAGAGCGTGATGTGGATCCAATCAGAACTTTTAGTAACGACATTTGTGA
GATATTCCAAGTGCTTGGAATTGAAGCTGTACGAAAATCCGTCGAAAAAGAAATGAATGC
GGTTTTGCAGTTCTACGGTCTATACGTGAATTATCGACACTTGGCATTGCTTTGTGACGT
CATGACAGCAAAAGGTTATCTTATGGCCATCACACGTCACGGCATTAACCGACAGGACAC
TGGTGCTCTTATGAGATGTTCATTTGAGGAAACCGTCGATGTTTTATTGGACGCTGCCAG
TCATGCTGAAGTGGATCCTATGAGAGGAGTATCAGAAAATATTATAATGGGACAGTTGCC
GAGAATGGGTACTGGTTGCTTCGATTTATTACTTGATGGCGAGAAGTGCAAGGAAGCAAT
GGGCGGTCTTGGAGGCGCAGAAGTGGGAATGTATTTCGGTGTCGGAACGCCATCTATGTC
ACCACTTATGACTCCCTGGTCTACACAGAATACACCAGGATATGGAAGCAGCGTGTGGTC
TCCATGTCAAGTTGGCAGCAGTATGACTCCTGGAGGACCATCATTCTCGCCATCTAACGC
ATCTGACGCATCAGGACTCTCACCGGCATACAGTAATGCTTGGTCACCACAACCTGGTTC
ACCAGGATCTCCCGGACCTCCGCTTTCACCTTACTCGTCGCCCGCAGGAGCGTCACCATC
TTACTCCCCATCGAATCCTGTTTACGCTCCCGCGTCCCCGAGTATTACTCCAACATCACC
ACATTATTCACCTGCCAGTCCTTCTTACTCTCCAACTTCACCCAATTATTCCCCGACTTC
ACCAATATACTCGCCAACATCACCCAGCTACTCGCCAACATCGCCTGGTTATTCGCCCAC
ATCCCCATTATACTCCCCAGCTTCTCCTAGATACTCTCCGTCATCTCCCAACTATTCACC
AGCAAGTCCGGCTTATTCAACAACTTCTAATTTCCCGACAACTTCACCTAACTATTCTCC
ATCAAGTCCTTCGTATTCTCCCACGAGTCTATCGTATTCTCCAACGAGCCCAGGTTATTC
CACATCCCCTGGCTATTCGCCCTCGTCACCTAGATATTCACCAAATAGTCCTGTCTACAG
TCCTACTTCATCAAATTATTCGCCTTCGTCTCCAAATTACACTTCTGGATCTGTTTATTC
ACCTACGAGTCCTACATATTCACCTACTTCTCGCTCATATTCTCCATCATCACCGAGCTA
TTCGCAGTCTTCTCCAAATTATTCACCCTCGTCACCGAATTATTCTCCTACTTCGCCCTC
TGTGGCTGGAGGTAGTCCTACATATTCACCAACAAGTCAGCAATATTCTCCAACCAGTCC
ACAGTATTCTCCGACTAGTCCAGGCTATTCTTCTACATCACAACATCCTAGTAGCACTAG
GTATTCGCCGTCTTCGCCTTCCTCGCCTAATTATTCTCCATCATCTCACAATTATTCACC
TTCATCTCCCCGGTATTCGCCAGGATCATCAAAATATTCCCCGACATCGCCTACTTTTAC
TCCTACTTCTCCCAATTATTCTCCGAGCTCTCCTGCGTATTCTTCCACTGGTGGACCATC
TACCTATTCTCCAACTTCACCAACATATTCATCTACTTCACCCAATTATGATGATGGTGA
CGACTGAATTGAAAATGTTTTTTTTTACTATAATGTACTATAATTTCTACTATACCTCCA
TAATATACTAAATTTAAAGTTTTATTGTGGTGATAATATTATGTCTTATAATTTTTTTTT
ATGACTATGTGTAGAAAAATATTTCTCATACGCTCAACAGCATTGGAATAGTGTGAGATA
ATAGAAGATACATGAAATAAAAATGTATCTGTTACTAATTTTCACTTTGTATAGAATAGT
TATAAGTTATTTAGCTTAAGAAATACAAAATATAAATGGTATATTTAAGATAGTGCTGTA
TTTTCTTTAAACTAGATAAAAATGAAAATATTCCATTGTTTAAATAATCTTTTACGGGTT
TTCATTGTTTCAAATGTAATTCCAATGTGATTGCATTGATCAAGACTGGTAGATAAATAG
TTATCTGCGGAAGAAAATCGTAAAAGTTCAAAACAATTTTGAAATCTGTGGTTAATTTAC
TGTTTCAATTGATTAAAATTAAGTAAGGAGGATTGAAATGGATATTCAATAAAATGTGCG
TGTACCTTAGTATTAAGAACAAAAACAAAAATATAAAAAAAAGGATTGTGTGGTTTATGA
AACCACAGTAAAAGTGAAACTTTTTTTCACATTATAGACATTTAACTAAAAGTTTTTGGA
ATAATATTCCATTAAGGGTATAAAAATCGCTTTATCAATCTTAATTTTATACTTGGAAAA
TTGGAATGATAATGGGAAATGATAAAAGTAGACTAAGTCTCCAACTAATATTTTCATTGA
ACTCTGTGTCATGTATACACATATTTAAAAAC
(6512 bp)

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