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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN31365_c2_g3_i4
Scaffold_idBomo_Chr17
NCBI non-redundant
(nr)		LOW_QUALITY_PROTEIN:_DNA-directed_RNA_polymerase_II_subunit_RPB1_[Bombyx_mori]
Ontology
GO:0001055 F RNA polymerase II activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0006351 P transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
Transcript
Level		FPKM:0.08 TPM:0.05
ORF EntryO_BomoIG12844_5prime_partial:A_BomoIG_DN31365_c2_g3_i4
Sequence
(Nucleotide)
ATCTTTTGCCGTCAAGATGGCGACGGCGAATGATTCTAAGGCGCCTTTGCGTCAAGTAAA
AAGAGTACAGTTTGGAATACTATCCCCAGATGAAATTCGACGCATGTCAGTTACTGAGGG
AGGGATTCGATTCCCGGAGACCATGGAAGGTGGAAGACCGAAGCTTGGCGGTCTTATGGA
TCCTCGACAAGGGGTAATTGACAGAAGCTCACGGTGTCAAACGTGTGCTGGGAATATGAC
AGAATGTCCAGGACACTTTGGGCACATTGATTTAGCTAAACCAGTTTTCCATATTGGTTT
CATAACAAAAACAATAAAAATACTCAGATGTGTATGCTTTTATTGTTCAAAGCTGCTTGT
CAGCCCTACAAATCCAAAGATAAAAGAAGTTATAATGAAATCCAAGGGCCAACCCCGCAA
ACGGTTGACCTATGTTTATGATCTGTGCAAAGGAAAAAATATATGTGAAGGTGGTGAAGA
CATGGATATTGGGAAAGAAGGTGAAGAAGGTAAAAGAGGATCTGGTCATGGTGGTTGTGG
GCATTATCAACCCTCTATTAGACGACAAGGTCTAGAGCTCACAGCTGAGTGGAAACATGC
TAATGAAGATACACAAGAAAAGAAAATTTTTGTCTCTGCAGAAAGAGTATGGGAAATTTT
GAAACATATAACAGATGAAGATTCATTTATTTTGGGTATGGATCCAAATTTTGCAAGACC
AGATTGGATGATTGTGACGGTTTTGCCTGTCCCTCCATTGTGTGTTCGTCCAGCTGTTGT
TATGTTTGGCTCTGCCAAAAATCAAGATGACTTAACCCACAAGCTAGCTGATATAATAAA
AGCTAACAATGACTTGGAAAAAAATGAGCAGTCTGGAGCTGCTGCTCATGTCCTTGCAGA
GAATATAAGAATGTTACAATTTCATGTTGCTACTTTTGTTGACAATGACATGCCTGGTAT
GCCAAAGTAAGTAAAAGTAAATTGTAATTTTTTATAAAAGCTTTAAGTAAAAGAATTTTA
AAATAAACAAAATTTCCATTTAAAAAATACCATATTAAATGTTTTTTTCTAGAGCTATGC
AGAAATCTGGGAAGCCCTTAAAGGCTCTCAAAGCCAGATTGAAAGGAAAAGAAGGAAGAA
TTCGAGGAAATCTAATGGGGAAACGTGTTGACTTCTCAGCTAGGACAGTAATCACACCTG
ATCCAAATTTACGTATAGATCAAGTTGGGGTTCCCAGATCAATTGCTCAAAATATGACAT
TCCCAGAGTTGGTGACTCCATTTAATCTTGATAGAATGCAAGAACTTGTCCGAAGAGGAA
ATGCACAATACCCTGGGGCAAAGTACATTGTAAGAGAAAACGGAGAAAGAATTGATTTAA
GATTCCATCCTAAATCTTCAGATTTACATTTACTCTATGGTTACAAAGTAGAAAGACATC
TAAGAGATGATGACCTTGTTATATTTAATCGTCAACCAACTCTTCACAAAATGAGTATGA
TGGGTCACAGAGTTAAGGTACTTCCTTGGTCAACGTTTCGTATGAATTTGAGTTGCACAT
CACCTTACAATGCTGATTTTGATGGAGATGAAATGAATTTGCATGTTCCTCAATCAATGG
AAACAAGGGCTGAAGTTGAAAATATTCATATAACACCTAGACAAATTATAACTCCACAGG
CTAATAAACCTGTAATGGGTATTGTGCAGGACACATTGACTGCCGTTAGAAAAATGACTA
AGAGAGATGTTTTTTTAACAAAAGAACAAGTAATGAATCTTCTTATGTTTTTACCTACAT
GGGATGGTAAAATTCCTCAACCTTGCATTTTGAAACCACAGCCTTTATGGACAGGTAAAC
AAATATTCACTTTAATAATACCTGGTCCTGTTAATATGATTCGAACTCACTCTACTCATC
CTGATGAAGAAGATGATGGTCCTTACAAGTGGATTTCTCCAGGAGATACCAAAGTTGTTG
TAGAACATGGAGAACTACTAATGGGTATTTTGTGTAAAAAGTCGCTTGGTGCATCTGCTG
GCTCTCTGTTGCATATTTGCATGTTGGAATTAGGCCATGAAACTGCTGGACGATTCTACG
GTAACATTCAGACTGTCATTAATAACTGGCTTCTGTTGGAAGGTCACTCAATTGGTATTG
GTGACACTATTGCTGATCCACAGACATATCAAGAAATTCAGCGTGCAATCGTAAAAGCTA
AAGATGACGTAATAGAAGTCATTCAGAAAGCCCACAATATGGAATTGGAACCCACACCTG
GTAATACACTAAGGCAGACCTTTGAAAATCAAGTGAACCGTATCCTCAATGATGCTCGTG
ATAAAACAGGTGGATCTGCTAAGAAATCATTAACAGAATACAATAATCTCAAAGCTATGG
TAGTTGCTGGCTCGAAAGGTTCAAACATTAATATTTCACAAGTCATTGCTTGTGTAGGCC
AACAGAATGTTGAAGGAAAACGAATCCCATTTGGATTTAGAAAACGCACCTTACCCCACT
TTATTAAAGATGATTATGGTCCTGAATCCAGAGGTTTTGTTGAAAACTCTTATCTAGCTG
GTCTGACTCCTTCAGAATTCTATTTTCACGCCATGGGTGGACGTGAAGGTTTAATTGATA
CTGCTGTAAAAACTGCTGAAACTGGATACATTCAACGGCGTCTCATTAAAGCCATGGAGT
CTGTAATGGTCCACTATGATGGTACAGTTAGAAACTCTGTTGGACAACTTATTCAATTGA
GGTATGGTGAGGACGGTCTCGCAGGAGAGACAGTAGAATTCCAGAACCTGCCGACTGTTA
AATTGTCAAATAAAGCATTTGAAAAGAAATTCAAATTTGACTCTTCCAATGAGAGATATC
TGAAGAGAATTTTCAGTGAAGACATAGTCAGAGAGCTAACAGAATCTGGAAGTGTCATAG
CTGACCTTGAAAGTGAGTGGGAACAACTTTCTAAAGACAGAGAAACATTACGTCAGATTT
TCCCAACGGGAGAATCTAAGGTTGTATTGCCATGTAATTTCAAGAGAATGATTTGGAATG
CTCAGAAAACATTCCACATAAACAAGAGAATACCAACAGACTTAAGCCCTATCAAAGTTA
TAAAAGGTGTATCAGACCTTCTAAAGAAGTGTGTCATTGTAGCTGGTGATGATCGTTTGT
CTAAGCAAGCCAATGAGAATGCTACATTACTTTTCCAATGCTTAGTGAGATCAACACTTT
GTACAAAATTTGTATCTGAAGAACATAGATTATCTAGTGTAGCATTTGAATGGCTTATCG
GGGAAATAGAGGCAAGATTCCAGCAAGCACAAGTAAATCCAGGTGAAATGGTAGGCGCTT
TAGCTGCTCAATCACTTGGTGAGCCAGCTACTCAGATGACATTGAATACCTTCCATTTTG
CTGGTGTATCATCCAAAAATGTAACACTTGGTGTGCCTCGTCTGAAGGAAATCATCAACA
TTTCTAAGAAACCAAAGGCTCCTTCTCTAACTGTATTTTTGACCGGTGGAGCAGCCAGAG
ATGCCGAAAAAGCCAAAAACGTTCTCTGTAGATTAGAACATACAACTTTACGTAAAGTTA
CTGCTAACACGGCTATTTATTATGACCCTGATCCTCAGAATACTGTTATTGCAGAGGACC
AAGAATTTGTCAATGTTTACTACGAAATGCCTGACTTTGATCCTGCGAAAATTTCGCCTT
GGTTATTGCGTATTGAACTGGACCGTAAGAGAATGACCGACAAGAAATTAACAATGGAAC
AGATTGCTGAGAAAATTAATGCTGGTTTTGGTGATGATCTCAATTGTATCTTCAATGATG
ACAATGCTGAAAAGTTAGTTTTGCGAATTAGAATCATGAATAATGAAGAAAGTAAATTCC
AAGATCATGATGAAGAGACAGTAGACAAAATGGAAGATGACATGTTCTTAAGATGTATTG
AAGCAAACATGCTGTCTGATATGACTTTGCAAGGCATTGAGGCTATTGCAAAAGTGTATA
TGCATTTACCACAGACAGAAGCTAAGAAACGTATAACTATAACTGAACAGGGAGAGTTCA
AAGCTATAGCAGAATGGTTATTGGAAACAGACGGCACATCTCTTATGAAAGTGCTCTCAG
AGCGTGATGTGGATCCAATCAGAACTTTTAGTAACGACATTTGTGAGATATTCCAAGTGC
TTGGAATTGAAGCTGTACGAAAATCCGTCGAAAAAGAAATGAATGCGGTTTTGCAGTTCT
ACGGTCTATACGTGAATTATCGACACTTGGCATTGCTTTGTGACGTCATGACAGCAAAAG
GTTATCTTATGGCCATCACACGTCACGGCATTAACCGACAGGACACTGGTGCTCTTATGA
GATGTTCATTTGAGGAAACCGTCGATGTTTTATTGGACGCTGCCAGTCATGCTGAAGTGG
ATCCTATGAGAGGAGTATCAGAAAATATTATAATGGGACAGTTGCCGAGAATGGGTACTG
GTTGCTTCGATTTATTACTTGATGGCGAGAAGTGCAAGGAAGCAATGGGCGGTCTTGGAG
GCGCAGAAGTGGGAATGTATTTCGGTGTCGGAACGCCATCTATGTCACCACTTATGACTC
CCTGGTCTACACAGAATACACCAGGATATGGAAGCAGCGTGTGGTCTCCATGTCAAGTTG
GCAGCAGTATGACTCCTGGAGGACCATCATTCTCGCCATCTAACGCATCTGACGCATCAG
GACTCTCACCGGCATACAGTAATGCTTGGTCACCACAACCTGGTTCACCAGGATCTCCCG
GACCTCCGCTTTCACCTTACTCGTCGCCCGCAGGAGCGTCACCATCTTACTCCCCATCGA
ATCCTGTTTACGCTCCCGCGTCCCCGAGTATTACTCCAACATCACCACATTATTCACCTG
CCAGTCCTTCTTACTCTCCAACTTCACCCAATTATTCCCCGACTTCACCAATATACTCGC
CAACATCACCCAGCTACTCGCCAACATCGCCTGGTTATTCGCCCACATCCCCATTATACT
CCCCAGCTTCTCCTAGATACTCTCCGTCATCTCCCAACTATTCACCAGCAAGTCCGGCTT
ATTCAACAACTTCTAATTTCCCGACAACTTCACCTAACTATTCTCCATCAAGTCCTTCGT
ATTCTCCCACGAGTCTATCGTATTCTCCAACGAGCCCAGGTTATTCCACATCCCCTGGCT
ATTCGCCCTCGTCACCTAGATATTCACCAAATAGTCCTGTCTACAGTCCTACTTCATCAA
ATTATTCGCCTTCGTCTCCAAATTACACTTCTGGATCTGTTTATTCACCTACGAGTCCTA
CATATTCACCTACTTCTCGCTCATATTCTCCATCATCACCGAGCTATTCGCAGTCTTCTC
CAAATTATTCACCCTCGTCACCGAATTATTCTCCTACTTCGCCCTCTGTGGCTGGAGGTA
GTCCTACATATTCACCAACAAGTCAGCAATATTCTCCAACCAGTCCACAGTATTCTCCGA
CTAGTCCAGGCTATTCTTCTACATCACAACATCCTAGTAGCACTAGGTATTCGCCGTCTT
CGCCTTCCTCGCCTAATTATTCTCCATCATCTCACAATTATTCACCTTCATCTCCCCGGT
ATTCGCCAGGATCATCAAAATATTCCCCGACATCGCCTACTTTTACTCCTACTTCTCCCA
ATTATTCTCCGAGCTCTCCTGCGTATTCTTCCACTGGTGGACCATCTACCTATTCTCCAA
CTTCACCAACATATTCATCTACTTCACCCAATTATGATGATGGTGACGACTGAATTGAAA
ATGTTTTTTTTTACTATAATGTACTATAATTTCTACTATACCTCCATAATATACTAAATT
TAAAGTTTTATTGTGGTGATAATATTATGTCTTATAATTTTTTTTTATGACTATGTGTAG
AAAAATATTTCTCATACGCTCAACAGCATTGGAATAGTGTGAGATAATAGAAGATACATG
AAATAAAAATGTATCTGTTACTAATTTTCACTTTGTATAGAATAGTTATAAGTTATTTAG
CTTAAGAAATACAAAATATAAATGGTATATTTAAGATAGTGCTGTATTTTCTTTAAACTA
GATAAAAATGAAAATATTCCATTGTTTAAATAATCTTTTACGGGTTTTCATTGTTTCAAA
TGTAATTCCAATGTGATTGCATTGATCAAGACTGGTAGATAAATAGTTATCTGCGGAAGA
AAATCGTAAAAGTTCAAAACAATTTTGAAATCTGTGGTTAATTTACTGTTTCAATTGATT
AAAATTAAGTAAGGAGGATTGAAATGGATATTCAATAAAATGTGCGTGTACCTTAGTATT
AAGAACAAAAACAAAAATATAAAAAAAAGGATTGTGTGGTTTATGAAACCACAGTAAAAG
TGAAACTTTTTTTCACATTATAGACATTTAACTAAAAGTTTTTGGAATAATATTCCATTA
AGGGTATAAAAATCGCTTTATCAATCTTAATTTTATACTTGGAAAATTGGAATGATAATG
GGAAATGATAAAAGTAGACTAAGTCTCCAACTAATATTTTCATTGAACTCTGTGTCATGT
ATACACATATTTAAAAAC
(6618 bp)

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