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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN30718_c1_g1_i1
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		LOW_QUALITY_PROTEIN:_regulator_of_nonsense_transcripts_2_[Bombyx_mori]
Ontology
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006952 P defense response
GO:0009611 P response to wounding
GO:0009863 P salicylic acid mediated signaling pathway
GO:0009867 P jasmonic acid mediated signaling pathway
GO:0042742 P defense response to bacterium
GO:0048471 C perinuclear region of cytoplasm
GO:0048571 P long-day photoperiodism
Transcript
Level		FPKM:0.55 TPM:0.31
ORF EntryO_BomoIG101579_complete:A_BomoIG_DN30718_c1_g1_i1
Sequence
(Nucleotide)
CTGCGGACCCTAGAATTAATACAGAGGATAGATATTTTTTTCGTTGCTTCATAGCGGTCT
CCTATTCTGACCTATTATGGATGATATGAGGTGAAGTTGCTTTATTTGAAACTTTAATCA
ATTGAGATGAAATTTAATGAAACGAGATGAAATGGGATGAAATAAAGTATTAGTAATTAT
ATTTATTATATTATGGTGGTTATTTACTGAAACTAGTGAACTTTTTGGCAGAACCCGAAA
GGCTACGAGGCTTTCATTTCATTTTCCCACATTCTGCACTTTCATAGATGCTAAACACTT
ACTAATCCACCGTTATTACACGCCTGCACGCACGCACACTTTGAACACACTAAATTAACA
AAAAAACTATTCAAAATAGTTCGCTCCTAGAGTTTCCGCCAGACTTATATTTTTCAGTGC
GTTAATTTAAATTTACACTTAAAAAATTTACAGTTTTGCGTAAAAAATTTGTTCCATTTG
AAAAAGAAAAAAAACCCTTTTTTTATTACATATATTATTACAATACATTACATACATTAG
TTTTTTATTTATTTAAATTTCTTAGGACCGAATATGAGATCGGCGTCCGGTGCCCCTTTG
GGATGTTGGTATTTCTGACGAACATGCTGACCTCTGTTAGGATTACCGATACCTCCCGAT
CCACCACCGCTCTCTGCGCTATATTCTTCTTCTTCTTGTCTTTCCGATATATTTAGAGTA
AGTCGTTTAACTCGTTCCATTTCTTGTTTATCAGCTAAAGCTTGTTGTTGTAGATTGCTG
GCCAATTCCGGTGGAGCACTGAACGATTTATATTGTGGTTTCGTTCCTTTACGAACCATA
AGAACGAATTCCACGCCCTCTTTTCCTTGCAAGAGCTGTTCATACGTCTTCTTCGTAGTC
TGTCTGCAGGTCATCGGGACAGCAATGTCGCGTTGTTGCGGTCTATTCTCCCGTTGTCTT
TCTGCAATATTTTCTGTTACCATTTTCTCGAATGCCGATTCGAACTCAACGTCTTCTACC
TAAAAACCGAAATGCATACGAGTATATGTAGTAGGTACACTGATTTTGTAAAATATTTTA
AAAATATATCAAAGATCTCCACTTACATGTTTAGTAGCAGGTCTTCGTGGCTCAATTGCC
ATTTCATCTTGCATTTCGTTTTCGTCATTAACATTATTTTCGGTAATCGGTTCTTCATCA
GAGCTTTCATCAGGCAATTGCGGATTGTCCGTTTCATCATCCGTTTCCATGATTGTGTCT
AAGCCGTCGTTCACACTATCATCACCTTGATCCTCATTATCGTACTCTTCCTCTCCTAGC
TCCGGATATAAAGTCTGTCGTAGTTCATCTATTGCATCCTTACACTGTTGCCAGCTCGTA
AACAAAGTCAACTTAGGGCGTAAAGTCGTCAGGCATTCTTGATAAATATATTTAACGTAA
ATAGGGAATTGATAGTCTTTTGTCCATATCGGATCAGAGAACTTGAACCAATAGTAATTT
TGGAAGAAGGTCAAAAAATAGTCTAATCTTTTTTTGCTCGAACCACTGTTGAAGTATGCA
CCACAAGTCTCAAGCAGAGCGCAGACTAGTCTTATTCTAAAAACATTATCAGATGGGTCC
AATACAGATACACTGCTGTGATCATTGGTGACACCAAATGTTATAAATGAATATAAAACA
GTGAAAACATCTCGAGAATCTAATAATTTATAATTATAGAGTTCTCCGAGATACCGAACA
GTAGCTATCCTTCTTTGATTATATCTTGGATGTGGGTCTTCCATTGTTACCCTTATTTCT
TCTAATATTGTGTCAACGACTGCTGGAGCTACTACTTCTTGCCAGATTGCCAGTTCAGCT
GTCAGTCTGGCCAGAGCCCTTCTGGCACTTGCTCTTACCCTCCAACCTCCTGCGAGATGT
TGTATGGCAATGGCGGATACCTCTGGGTCATCCCAATTCAGTTTTCGCATTAGTCTAAGA
ATTTTTTCCTCATTACTTTTCTGCAAGTCTTCATGAAGTATTTTTCTGATAAATTGATGA
AGTGGTGGCTCTTCTTCTTTAGGCTGAACAGGAGTTTCGGGAGGGCAAACGTAATAGAAT
GCGTTTTCTATCTGTGTTACATATCGCGAATCTAGAGCTGAAACAGTTTTTTTTCGCATC
ATTTGCTGTAAATATATCATAGTCCTTTGGTGTGTATCTGGATTACAGTATAAATATCTA
CCACACGTTTCAAGCAGATTGCAAGCCATCTCAATATGGTGATGCTTAAAATCATGCAGC
AACACTTTCAAACAGTACAGCGCCTCCATTTTCGAATACAAATTAAACTTAACCAGTTCC
CCAATGAATCGCACCACTTTTATCTTCGATTCAATATTTATTTGATCCTTTTTCCTGACA
TGATACTTAAAGTCTTGTTTTAACATTTGACACAGGTCAACACATACTTCTGGCAGTACT
GGATATAAAATCGCAGCAAATCTTGAGTAAAATGGCAACAGATCTAGCCTTGTTCTGGCA
ACACTGAAGAGAACTCTTGAAAGTTTCTTCCGATTATTCTTTGTATTGAGATTCAGGATA
AAATCAACTGCTGCATTATCTATGAGTTCTCGGTTGATACAGTTGGGAAGTTCATTCAAA
AATGTATCTAATCCATGTTTATTGGAAACATTTGGTGGTTGTATTTCTTCAGTTTCTACT
TCTTGAACTACAGATGGGTCCTCATTGTCACTTAATTCATCCTCCTTCAAATCTTCATCT
AACATTTCTTCTGTTACCGTTTCAGTTTTGCTTTTCACAGTCTCTTTCATTTGATAGTTA
GGCATAAAAACTTTTAAGTCAGGCAAGCATGTATAGAATGTTCTAGAATCTTCGTCCTGC
CAAGGATCAGTACCGGCTTGCATAGTGATGTCTTCATTGCCACCAATGGTTACACTTCCT
TGAGTCTCTATAACAGTCAGGGACAAAGTGGGAGGTTCACCAGCTTCACCCAAATCTTCT
CCAAGAACTTCAGCAAAATTTTGTGCATTTACTAGTAGCTTGTCATAAGTTGTTTGATGT
TGTTCTAATTGTTCTTTTCTTTCTTGTGAGAGTTCTCCTCTGGTGTGCAGAGTCCTCTGA
TTTGCTGCATGCAGAGCTTGAAGTTGAGCTCTTTCCGCCAGCAGATGTTTGGTTAGTGAA
AGAAAGTAATCTTTCAAGAGAGTTCTAACTGCTGTTTGTTTCTCTGCCGGTAAAAATGTA
TTTCGAGGAACAGGAATATTATGTTTCTCAGAAGCTTCTCGTATTTTTCTAGGCATAAGT
CCAGCATAATCATCACCACAGTGTTTGCAAAATGATAACAAAATTGGTATATTGTTATGC
TCTTCTTTGTCCATGTTTATTAGAACAGTTAATACATTACCCAGCAAAGGCAATCCAGTT
TTATTCATAAAAATACCGACAGCCACTAATTCTGCATAAAATCTTATATCCACCCGCAGT
TTTGATGAATTTGTTATTTTATCAGTCGCTTTGAATGTTAAAATCTTTTGCCAGTTTTCA
AAAAAGTTAGATGAAAAATCAGCGTAAGTACGATGAAGAACTGAACATAGAGTTATAGCA
GCAGGAATATCAGACATTTTCAATTTTGCTTCTGCTATTGCAGCAGCCACTTCTGATATA
TATTTTGTAAGATTTAATGTTGCAAAATCTTTCAAAAGTACATCCAGCTGAGAAGCACTA
AATGATTTTAGTTTTTTTACAAATGTGGTATTCTTTTTCAAACCTGAATCTAGCTTGGAA
AAATAATTTTCTGGTGGTCGAGAGCAATTCAAATTTTGATTACGTATTTCATATTTTTGT
TTCAATCTGGCTTCCAAGTTAGCTGTATACTCTTCGAGAGCCGCTTTCTCATTTTCTTCT
AAATCTTTAAGCGGTTCTTCAATAGGTGTTTCGTTTGCCTCATCGTTGTTGGTGGCAGTC
ATTTTATCTTTTAGATAGGTATTATTTGAAGCCAATGGACACCACTATATGGTGTGAGCA
ACTTTCTTTTGCATTTATTAACTCAGCAAATCACATTTAATTCATTTAAAAATTTACAAA
CATTTGGGTAAGGTGTCATAAATATTATGTGTATTATCTTTTTTTTAAAGGGATTTTATG
ACCTGGTAACTAAGACCTTTAAG
(4163 bp)

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