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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN30700_c2_g1_i3
Scaffold_idBomo_Chr10
NCBI non-redundant
(nr)		ring_finger_protein_5_[Bombyx_mori]
Ontology
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006914 P autophagy
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036503 P ERAD pathway
GO:0036513 C Derlin-1 retrotranslocation complex
GO:0044390 F ubiquitin-like protein conjugating enzyme binding
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:1904264 F ubiquitin protein ligase activity
Transcript
Level		FPKM:2.21 TPM:1.23
ORF EntryO_BomoIG100830_complete:A_BomoIG_DN30700_c2_g1_i3
Sequence
(Nucleotide)
TGTACTGCGAGTTCCAATATTTTCTATAAACATCGACTGTCATAGGACCCTTGTCCTTAC
AGCTGACAATTGACAATCAAGATTTTTTGACGCTGAATGACATCTACTGACAGATCAGCA
ATCAGCATACCACGGGATTGGAAATGTGATTTATTTATTTATTAACAAGTTTCTATATGA
AATAATAAACTCAAACATCAAATTTAAAGTGGCAAGTGTTGTATTGTTATTGACCTTTCT
CTGCAAACAATAACTTGTTATAAATTTATAATTTGAATATATTTTGTCGTGTCACAATAA
CATCCAAGCGAACGTCACTACACCAGTATCGTGATAACGCTTCATAAATTGAAAATTTCA
GTTCCAAAAAAGAATGTCAAGTTGTGATTATTAAATATTTCGTAATGTAGGGAAATGGCG
GAGACTAGTCAAGCGCGAGCGAGCCCCTCGGCGCCTGGGGGCGACGCTGGTGGCGAAGAA
GACAAACATGACGAAAGAATGTTAGAATGCAACATCTGTCTGGACACAGCCCGTGATGCA
GTCGTCAGTATGTGCGGCCACCTCTTCTGCTGGCCATGTTTACATCAATGGTTGGAAACC
AGACCCAGTCGGCAAGTCTGTCCTGTTTGCAAGGCTGCCATCAGCAGAGAGAAAGTGATC
CCGCTCTATGGAAGAGGAAACACAAAGCAGGAAGACCCAAGAAACAAGGTGCCCCCCCGG
CCGGCAGGACAGCGCACGGAGCCGGAGAGTACGAGCGGCTTCCCAGGTTTCGGCTTCGGC
GAGGGATTCCACATGTCGTTCGGGATAGGAGCCTTCCCGTTTGGAATTTTCACCTCAACA
TTTAATTTTGGTGATCCAAGGCCTAGCGCCGCGCCGCGCGGTACGGCCCAGTTCGAAGAA
GAGCAGTTCCTATCGAAGATATTCCTGTGGGTCGCGATCCTGTTCGTGCTGTGGCTGGTG
TTTGCCTGACCGCCCACAAGTACTGCCACCAGGTTACAATACTAATTAACTCTGTAAACA
TTTATTTAATAGAAGGATACTTGAAAAGTTCTTTTCAAAATTGATTCTTGTGACTACGGT
AGTGTTTTGTTGACAGTGACAGATCAAGTCGTGGTTATTTAATTAAAGACACCGAACCTT
TTATCTGTATATTTATGTGATGATGAGAACGATATCTGCGAATTTGTTGCATTTTTTTTT
TTCAAATTAAAAAAGAGCAATAACGTGTCACCATCAGCAACCGCCAATTTGAATATGGCT
ATCAATAGTAAACGTTTTTAATTTTTCCATAACACTAAATCAAATGAAAGGAAAAGGGTC
AATGACCCTTGTAGTATTGGTTCGAAATATTTTTGATGCGATGATACCTCTGTGCGAGTA
TTAAATGCGGCGCGGATCTGGTAGAACTGAAAAGCGAAAACATTTATGTAAATATTCCGT
ATGTTCTTGGATATTCGCGAGCCGTGCGAAATGAAAACATTTACAATTTACCTACGGTTT
AGTCTCACGTATCTCTCATCGTTTGATTTTATTAATTGCGCCGTTTTGAATACAGAATAT
TTCCCACAGTTTTTAACATTGCGTTAAATAAAAATACGTAGAACAAAAATTATTACGAGT
ATTATAAACGTCAGAAATAACAAAACATAATGTTAACACTAAAGCTATTCTCTGTAGCAA
CCAAACGAATAAATGAAGTTTTAACTAACACAATCAGATGATTATTGAGAAAAAAATCAA
ATATATTTCGGTGTTTTTAGTTAGATAACAACCGCTACGTAAAAACTCTGACTGGCTTAA
AGAAATCATTTAATTTCTGAGGTTTGACGAGTGAACGAAAATATTTACGGCTCAATATCG
CGTTCAGTTCAAACACGAAACAATTCGAGAGCTCGACCTCACGCCTCGAGCAGCAATCGA
GTGGCGTCCGTGAGCGCCGATGAGCACTAAACGCCGAGTGGCTTGTGAGGTGGACGCATA
GAAATGAAATAAGAAAAAACACCACCAGAACGCCTGTTAGAATGACATCACAAATGTTGT
AATGTCGATAAATATCCATTAACCAGGACTATGACATACCGTAAAGCTCACCTGTGCTCA
ATATGAGTATTGTTTTGGAAACGTGCAGGTTCACGGCACAGTGCTCTCAACTCCGTACAC
ATTTTTCAAACACAAATTTAAAAAATAAAACATCATTGGACTGTCGCCATTCTGTATGCT
TAGTGCGAGTTTTTTAACGTTCTCGATGCGTAAAAGTTAACTCAAATTTGTATGAAGTTG
AAAAAGTCCCTTCGTTTCCCGCTCGGGGAAAAAAACTCGCAATAAGTATGTACACTGTTC
TAATCTAATATTATTCCTGGTATTTTTTCCTATTGAACCAACATTCCTTTTTTTATGATA
ACCTTTAAAAGTTCATAATAATAAAATACATATTATGTAATTTATTTTAATGTTAAAATT
AACGTGCATTGATGTTTGTATCAGAAGGTAATTTTCTAAAATTGTTGGAAATTGTTAAAT
TGACGCATTCGAAGGAAAGTTTTGGGCACCACAACTTCATGGTGAGTTCAATGAGGTCGG
CTTGGCATCCGTGGGGATGTTGCCTTCGTGGTGTGGTGGGCTGATGGCTGCTCATCACAA
ATTGGCGCGGGGGTGGTACCAAAGATGGTGGTAGATCGTAAAAAAGTATTTTGGTGGAAA
CGCTGAAAATTACCTCCTGAAAAACAGTAGTATGTAGTAAGTTTAGGAAACAGTAAAAAG
GTCTAACGGTTTCAAAAATGAATTTAATCACGCCAGTAATTTAATTAACTACATTTGCGC
TATATTTTGAAGTATTGCGTGTTCAATCTGTGGTTATTATAATATTTTCGTGTATATAAC
GTGTATATATTATTATTGTGTTATTGTATTTGCTGTAAGTACATAAATTTTAATGGGAAG
GTTCATTTTATTGTAATAAATAAAATAAAATAATCTAAAAAAAAAA
(2986 bp)

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