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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN29851_c3_g4_i3
Scaffold_idBomo_Chr13
NCBI non-redundant
(nr)		HMGB_protein_isoform_X1_[Bombyx_mori]
Ontology
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000228 C nuclear chromosome
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034473 P U1 snRNA 3'-end processing
GO:0034475 P U4 snRNA 3'-end processing
GO:0034476 P U5 snRNA 3'-end processing
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071028 P nuclear mRNA surveillance
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
Transcript
Level		FPKM:2.94 TPM:1.64
ORF EntryO_BomoIG103346_complete:A_BomoIG_DN29851_c3_g4_i3
Sequence
(Nucleotide)
AAAAAGTTTAACAGATAACCTAAGAAAAATAATCACACATTTATTGCTAGGTATGCCTCT
TTAAACAGAATATTCACAAAAAAATATGAACCAATAACAAAATGCGTGATACTTGTTTAT
CGAATTGTGAAAAGAATTTCATACAAAAGATCGTATCTCAAGGACATCGCTTGGACGGTC
GAAATTTTAATGAAACCCGAAAACTAGATATATCATTTGGTTCTGAATATGGTTGCTGTA
TTGTGTCTTTGGGAGAAACGAAGATCCTATCAGAAGTCACATGTGAAGTCGCTCAGCCAA
AACAAATAAGACCAAATGAAGGCATCATATTTATTAATGTTGAACTTAATCCTATGGCCG
CTCCACAGTTTGAAGCCAATAGACAAACAGATCTCACTGTTTATCTTGTAAGATTATTAG
AAAAATGTTACAAAGATTCAAAATGCATAGACCTGGAATCACTCTGCATTGTAGTAGAAG
AAAAGGTTTGGTCTTTAAGAATTAATATTAAAGTTCTAAACCATGATGGTAACTTAACTG
AATGTGCAAGTATAGCTACACTTGCCTCAATAGCACACTTTAGGAGACCTGACTTTACAA
GAGATGGTGACCGAGTGATTATTCACACATTAACTGAGAAAGACCCAATACCAACAGTTT
TGTATCATTATCCTGTGTGTACAACTTTTGCATTGTACAGTAATGATATCTTACTCACCG
ATCCTAATTTCCTGGAAGAATCAGTGTGTACAAGTAATACAGAGGAAGGCATCAACACTG
CAGGAGGCCTCCTGGTTTTGGGAATGAATCAATATAGAGAAGTATGTTTACTTGATTTGA
CAGGAGCTGCAATATACACATCTAATATAGTTCATAAAGCGCTTCTGAGTGCTGCAGACA
AATGTAAAAAATATGTGGAAATTATAAAAAATGCCGTTGCCAAGGATGACAACTTGAGGT
GATTCATTTAATTATTTATGTATTTTTTGTAAGAGGGG
(998 bp)

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