SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN29813_c0_g1_i5
Scaffold_idBomo_Chr17
NCBI non-redundant
(nr)		nuclear_protein_localization_protein_4_homolog_[Bombyx_mori]
Ontology
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005829 C cytosol
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007030 P Golgi organization
GO:0008270 F zinc ion binding
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0030970 P retrograde protein transport, ER to cytosol
GO:0031625 F ubiquitin protein ligase binding
GO:0034098 C VCP-NPL4-UFD1 AAA ATPase complex
GO:0036501 C UFD1-NPL4 complex
GO:0042175 C nuclear outer membrane-endoplasmic reticulum membrane network
GO:0043130 F ubiquitin binding
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0070987 P error-free translesion synthesis
Transcript
Level		FPKM:0.04 TPM:0.02
ORF EntryO_BomoIG103365_5prime_partial:A_BomoIG_DN29813_c0_g1_i5
Sequence
(Nucleotide)
AGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGGGGCGGGGGCGGGAACAGTA
ACGAGAAGTCGTTCTGTTCTCAGGTGTCCCCTTTACTCATAAGGTTTTAGAAGATATTAT
CTGGGCATGGCGCACATGTCGCAGGAGGCGGCGGCGGGGGGGTTGTGGAAGGTGCAGACG
GCGCACGTCCAGACGGCTCGGCCCCCCTCCGCCCGGACCCCTTCCGCCCCGGTGTCGGCG
GCGGCCAGGTGCAGCAGCGTGGCGGCGCTGGGCAGGGCGCGCCACGCCTCGGCGGCGTCC
CCGTCCCGCAGCCGCACGGCGTCCAGCAGCGGCGCCAGCGACTCCATGCCCAGCGCCAGC
GCCTCGTTGGACGCCAGGTACAGCAGCACGTGCAGGTCCGACATCGCCTCTAGGAAGCTA
TCGCTGGCCGCTATGTGCCGGTGTAGCGCCTGCAAGGTCTGCAGGTGCTGCTGCAGTGGC
CGGTTGGCCGGCGGGAAGGTGGCGGTCGCGCCGAAGGTGGGCGGCCCGCCGACGGCGACC
CCGCAAGGCACGTCCACCAGCAGGTACGCGACCGGCAGCCTCTTCGCGGACACTCCCACT
TCGTTGCCGTACTCGTCGCGTTCCGAATATAAACAATGTACCTAGAGATTATGTAGAGGC
TTTGATTATGCAACACGTAGCGTAGAGCGCGGCGGCGTACGTCGAGGGCACGCGCCGATC
GATACGGACCGGCGCTGCTGCACGCATCATCCAAGCGAC
(759 bp)

- SilkBase 1999-2023 -