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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN29668_c0_g1_i4
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		homeotic_protein_spalt-major_isoform_X3_[Bombyx_mori]
Ontology
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
GO:0007423 P sensory organ development
GO:0007424 P open tracheal system development
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007438 P oenocyte development
GO:0007525 P somatic muscle development
GO:0007605 P sensory perception of sound
GO:0008584 P male gonad development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0021782 P glial cell development
GO:0030539 P male genitalia development
GO:0035155 P negative regulation of terminal cell fate specification, open tracheal system
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035310 P notum cell fate specification
GO:0042659 P regulation of cell fate specification
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045465 P R8 cell differentiation
GO:0045466 P R7 cell differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046845 P branched duct epithelial cell fate determination, open tracheal system
GO:0046872 F metal ion binding
GO:0048098 P antennal joint development
GO:0048644 P muscle organ morphogenesis
Transcript
Level		FPKM:0.39 TPM:0.22
ORF EntryO_BomoIG13958_complete:A_BomoIG_DN29668_c0_g1_i4
Sequence
(Nucleotide)
GACACATCATATTTATAACTAGAGCTACTCTAATACCTATTTGCAACTTGATAATAGCTT
GTAGGTGCTATGAGTCTAGACGTTTGTCGTTCAGGGCCTATCGCCGATACGTCACTTGAG
TATAGATCCACCAGACGAAGAAATTTCAATAATATACTTACTGTTATTTTTTTACTCTGT
GGTAAGATTTGAGTTCACAATGAGATCGCGATTAAAATGCATCAATGCGGTCAGCAGACT
TACCAAAGTGGTGGATCTACCCTCCGTCGCACTAAGAGTGTGTATGCATGATTTATAATT
TATAAATAATTTATTAGGACATTTATTTATACACAGATTACTTGAGAAGGTATTTATAAA
ATACATGAAACGTTAAAAATTAATTGTATAAATTAGCAACTGGACTACAACGTCTAAAAA
GCATCGAGCAAAATGCAGTTTTGGAAATACATATTAGTAAATATAACTTTTCTTTTTTTT
GTTTTTTAAAAGAAAACGTGGTCATATTTCGGTCAGTCTGCAAGTGCCGGTACTACCTAC
AAATAAGTACCTACACTATATAATTTCTCTAGTTTTACATTTTATTTTCTCAATAACACC
AGTCGCTCACTTTTTTTACAAAGATATGTTGAAGTATTCTAAAGCATTACAATAGCTATG
ACTCTAAATACTTATAAACTATGTAGACCTCAAATGCAAATACTTTAATTTACATGATAT
GAATGTTATGTCATTAACCTCTGTTACTATTACAAAAGACATCTACACAAATCGTTTGGT
AAAATTGATATATTTCACTCTAATGGTATTTTGCATTATAAATAGGCATTGATTATTACA
CAGGAAAAATGTCTGTTCTGATTGACATGTAAGGAAAAGTTAGATAATTTATGACGTCAA
TATTATTCAGGACGTATATTTGGAATGTGGATAAAAGACAAAATCATGCATATTGCACTC
CAGTTGTGTTTGTACATTAGTATTCTAATATAATAAGTATTTAAATTCACTTTATAGTTT
CATTCATTCTCTACTAAACGCTATAATACAAAATTATTTACACGTAAGTTTAAAATATAT
AGCTTTATGAAATAAATTTTTGGGATAATTTATATGTTTTGATGTAGCACATTCGAGTTT
AGCGGATGACGAATTCCGGTAGTGGTCTTGCTACGCGTCTTCCGGTCAGCGAGACACATC
CTCTAATGTGTACTATCACAGAGTCATGACATAAACTTGGAGCCCGCGAGGAGCCCCGAT
TGCCCCAGGCCCGTACTCGTGCGTAAAGTTAAACTAATTCTAGGCTTAATAACACATGGA
ATAACAAAGTTATATAGCGCTACACTCAGCACGTAAATTATGCTAAAACACGCTCTCGGC
AGCGAGTCATCAGTCCGTTTCGCAATCAATTGTTGCTCTATATTCTTTGTACAATTTACA
CAAGACGCCGCCCCGACCGAAGTTCGTTCGGTTCGAAACGGTGAGTGCCGATCAGTTCGT
TTCAAGAAACAGGGTCCTCCAAGAGACCGGCTCGTCATTTATTTTGGAATGTAGTCGGGA
TTTTGAGTTTCGAGTTCGTTTAAACCGTAAGACCTTCGGTGCGCGCCGGCGGCGGCAGCG
AGGCGAGGGGGTGAGGGTGGTGCGGCGCGGGGGGCGAGGTCTGCGCCACCGGGGGAGCGT
GTGCCCCGTGACTGCTCGACGACCTGTACTCCCCCTCTTCGCGCATTTGCCGACTGCGTT
CGGCTAGTTCGCGTCCGCGTTCGGCCAGCTCTCGCATCGCCGCTTGTCTCTCGTCACCGC
CTTCTAGTGAGGGCGGTCTCTCCAGGGGAGAAGCCGCTCCAGGGCGAGCGGCGCCGAAAG
GACCGAAGCCCAGTAGACCTGGAAATTTTCCAGCTACGCCGTTTTGACCCGCGTTCTGTT
GTATCACTGATATTTCGTTCAGCTTTTGCTGCATGCCGTTGAGGAAGGGCGCAGGCAGGT
ACGGGTAGAATAGGTCCGGTCGCCGCAGCAGGTCGTGGGGCTCGTGCAGCGGCCGCGGGG
GCAGCTCCAGAGACATTCGCCGACCGCGACGAGAAGCGCCGCCGCTCCACATGTGAGTGC
CCATGTGCACCTTGAGGTTTCCTTTAGTAGTGAATGCCTTCTGGCAGACAGCACATCTAA
AGGGCTTGTCTCCGGTGTGTGTCCTCATGTGGATTTGTAACGCTGACGACGAAGAGAAGT
TCTTGCGGCACACCCCGCATAAATGCTTGGATGATGTCTGCTGCGGTGGTGGATGTGGCG
GTCCGCTAGGAACACTGGGCCGTTTCGGTAAAGGCGGCATGTCGATGGATGGTGTGTGGT
TCATAGGCGGTGGCACGTGTACAGGCGGAGAGCGTTTCAGGTCCAGTTTTTCGGGCGACC
GCCGTTCTGGACTCTGATCCCGCCCATCCTCGCTAGAGGGCGCCCCGACGACATTCTTAT
CGAAGCCGGGCGGCATGTCGCGGATCTTGTGCGTTAGCATGTGTTGCTTCATATTGCCCG
GATAGACGAAGGCGTTCCACAAGTCCAAAGCAGTGGCGTGCGGCGGGCGCGGTGCCCGCG
TGCGTCTACCGCACCGACAACCGCCGCCACTGCTCTTAGTGGAAAATCCGCGTTCACATA
CGGTGCACTTGAAGGGACGTTCTTTAGTGTGGCTGCGGTAATGTATTTCGAGCGCAGAGT
TGCAGGCGAATGTCTTGTAGCAGATGCTACACGTAGTATTGCCACGCATTGAGAGATTTT
CCGGTTGGTCGGGGTCCGGCTTCACATGCGGACTCTCTCTGCCGATTTGATCTTCGTTGC
TATACTTTGAGTCCATGCTGCAGTCATCGTAAGGTGAGGTCGATGGATACCGATCTTGTT
CCGTTTCTTGTGCCAAATCAGTTTCCTCGGGTTCACGTTTCGGAGACACACGGTCAGCTT
CTTCAAAACTAGAATCTCGTTGACTCTCCTCATCTTGAGGTTCACATTTAAATAAATCTT
GCGCTGATCGAGCGGGACTCGGTGCAGATGGTTTGCTAAGATCTGCAGGAGCATCTTGTT
CTTCCCGCATTGCAAAGAGTGGGTGCGGAGGCAGAGGTTTGTCACTAAGTGGGCGAGGCG
GAAGTAAATCATGATGTGATGGTCTATATAGTGGCAAGCTTGGCGGGAAAGGGGCCGGTG
CACCCGGAGGAAACTGTAGTGGGTGGGGCGGCATGCCGGGAATGGGTCCCGGTGACAATT
GTGCTAATAGAGGTGGATGATACTTGTCCAAATGCTCCGGTACAGGATTGGGATTCATCT
TCACGTGTGGAAACTTAGCGGTATGTCTTTGAAAATGCACTTTTAAATTTCCTTTGGTAG
TAAATCGTGATCCACATACGTTGCATTTGAAAGGTCGTTCACCTGTATGAGATCTGATGT
GAATTTGTAGGGCAGAATCGCTTCCAAAAACTTTTCCGCAATATCGACAGCGATGCTTGA
AGAATGGTTCGTTACGTCCTCCCGATTTTCCGTCGTATGGCGACATCTTGCCCGATTTCC
GGAAGGCTAATTCGTCAGCAAGATTATTTGCCAACAAACCTTGCGATGCATTGTCTAAAA
CTTCTTGCGCTCTTTTTTGTAACATTTCCAGTGTGTTAGGTTCATTGAGAGACGGCGGCG
GATCGTTATTTGTAATGATAGTAGAAGCTAACGATGAAGATATGGAGCTATAAGGCGGGT
GTGTCATCATTGACGGAGACGAGGTTGGAATTTTTGGAACAGAGATTGGTTCCGATTTTG
GTGTTAGGTGCGAATGAGTGGAGGGTAGGTTCTGACTAGCGGGGGGAGTGGGTGCTGCAG
GAGTTGGCTCCCTTGGGGGACGAGGCGGCGACGGTGATCGAGCGATAGGCACAGGCGCAA
CCGGCTCCGGTTCGCTCGGCGGTGGGCTTGATTGGTGGTCTTCTTTTCGTCGTGTAAGCG
AAAGCTGATTTTGAAGTTGACGTATAAGTTGTAACTGAAACACTTGTTGGTGTTGTAATG
TAAAAAGTGTGCTTTGTAAAACGGCCAGTTCATGTAATGCAGCTTCATTGTCAGTGTTAT
TGGCCAAGGCCGTCGCGGCAAACTGTGCTACAGCGACTTTAGTGTTTTGCAGGGCTTCGA
GTGTGACGTGGCCGGCGACTGGGAAAGGTAGCCCGACCGGCGGAACGTCCGCTTCCGGTA
CCTCCGCTTCGCCGTCCTCGAGGCTGTTGTTATTCTCGGCATCTTGTCGATGTCGTCGCA
CCTGATCTAATTGTTTATTGGGACCGTCCATCTCCTCGTCGCCGGATACAACCATTTCTT
CGGGGTCGGAGTGCATTCTTTCCTCACCCATCTGCATTGCTTTTTCATCGCAAACGCGTT
TGTGGTAGAGGAACTCGTGCAAGCTCTCGAACTGTTCCTGACACCTTGGGCACATGTGGG
CCTCCGGTCTATCTCTCGCCTCGTCCGTACCATGATGGATGTCATCTTCTGAACACGACC
CGGAACTTTCACCGATGGAGACGCGGCGGACGCAGGCTGGCTTAACGCGCGGCATGTTGT
GGCCTCAGCGCGGGTGCATGGCAGGAGCAGGGAACACTCGCGCGCGGAGCCCTCTACTCG
GCTCGGTCGAAGTACGATGCGTGCGGCGGTGTCGGCGTGCGGCCGGGCACACCATTCGCC
ATC
(4683 bp)

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