SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoIG_DN29610_c0_g1_i1
Scaffold_idBomo_Chr24
NCBI non-redundant
(nr)		KDM4_isoform_X1_[Bombyx_mori]
Ontology
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016577 P histone demethylation
GO:0032454 F histone H3-methyl-lysine-9 demethylase activity
GO:0033169 P histone H3-K9 demethylation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
Transcript
Level		FPKM:15.08 TPM:8.40
ORF EntryO_BomoIG13503_5prime_partial:A_BomoIG_DN29610_c0_g1_i1
Sequence
(Nucleotide)
TTCCAGTGTTGAATAGATTTATACAATTCGGTCATCTTTATAACAATCAAATACTAAAAG
AAGTCAACCATGTTAATAAAAATAAAAATTACGCATCACTGCGGTATTAAATTTACAATA
AATTATCCTTGAGAATGATATAATTAGTATTATCTGTGTACAATGTTATCAAGAGAAATA
GGGAGTGCCAAAAAAAAATTTTTAATACACAAATTAAAATGTCTCAACAAATTTATTTTT
ATTTATTTCCTCACACTGCACTCTGCGCATCACATTATATTTAAATTTACATTATTCTTT
ACTTATTGATAAATAAATCTATATTATTAAGGATTATTGTGAAAACCGTACCAAGGCGAC
TGGTATGGGCTTCTGTAGTATTGGTTTGAGTTCATTTGCCCGTACATCGTTTGAACTCCA
TGTAGCATCGGCTGATAATAGTCTTGTCTCCACACACTCCTGTCCACAGGGGGTTGTGGT
CTTTCCCCATACGTCCTATAGTCTATGGGATTATTTACGAAAATTGAATCATTGTACTGA
CCAACTGGCATCGGAAAAGCATCTTGCTTTGGATGATCAACTTTTTGTACGACCACTTTT
TCTGGTTTAATGTATTTTCTAGGTGTCTTTCTGTGTGGTTCTGGATGTAATGGCAAAGAA
GACTGAGAGTTCATGAATTTGTGGAACTCGTCCACAAAAGCACTCGGGTTTTTGTTAAGT
GGCATTATTTTCGGTACACGAGGTACGTCTGGAATTGTTGGGTTTAAGATTGGATTGGGC
TGTTTTGTAGTTGCCGTGATCGGTTTCAATAAAGATTTACTACTACTAGAATAGGTGTGG
ATTGGATATGGACTAGGAACCGAATTACAAGTGGACGACGCAATCTTTAAACCAGCCTGA
GGATTTAAGGTCATTCTGTTCTTTGTCAATTTATTGTGTATTTTATTCATGATGGGTGAT
AAAAAGGGATGTCCAGTATTATCAACTTTCTTCGGAGTACGGGGTTTCCGTGGTTTCTTC
TCTTTGACATCACCCGGTTTTATATTGTTAGCACTGACAAGTGACGGATCTTTCTTTATT
TTTTCTTTTTTAGGTTTCTCATTAACACCACCATCTTTGATAGATTTTTCCTTTTTTCTT
TTCTTCGGTACCTTGTTATCTACTATTGCTGGTGTTGTCGAATGACTTGCGGTGGGTTCA
GTAGTTAAAGGATCTGGTGGTATTGTATTTATTTTGACATCAGTCTCGTGAGGTGGGGAC
TCCCAGTTAGACAACACAGCATTCATGTTTTCCAATTGCTCTTCAGATAGTTTTTTCGTT
TTAATTTTCTTTCCACGTGTTTTGACCAGTTTTTTGTCATCTGGGCTTTCCGATTTTCCT
TCGTCGTCCTTTTTAGATTTGTTCTTTTCTTTCTTTATATTCCTCTTTTTCCTGCCTTTA
GTGCCTTTACGAGCACTTTTTGTGACACCATAATCTGAATCCCGATCAGAATCTATGTAG
CCTGTGTCCGGTAATCTAGCTTCTGACGGATCCATCTCATCCCCTTTCAGCCATATATCT
TCTAAAACATCGAGCTGTGTATCATCAGGTTGCATAGGCAAATTTGGGCGCTTCATCGAA
GTCATCATGTCCAAATCCCCTTCAGCCATTGTCATTTCATCATCATCCATTACATCGTGA
CCCAGAATCGACACTGCTATAGCACCTTCAGAAATGCTCTTGCTAGCCATTGCTCTCTTT
AAATGAAGGGGGTGGCGTTTTTTCTTCTTAATACCTTCAATTTCTGCTTCAATAAATGAT
TCAGGTAGCTCAGTGTTATTCTTGTTGCAGAGTATGTCTTGCCCTGATGGGTGGGGAGCT
GGCACCATCTTTTCCGGCTGTTCCGGGTGACAACCGATATCTTGACCTTTCAACCAGAGC
TCATATCTGTCGGGCTGGAATCGTTTGACAAAGGTGTCCATGGATATTTTCACCATGTCA
TTACTACAAGTGCATTGCATGGCACGTTTTCCATATTCCACCCATCGAGGAGCAGCAAAG
TTTGTAGATTCCGCACAATTAAAACCATGATTGAATCCTGCATGATAACCATAGGGAAAT
GTGATCATAATTTCACCCGCCTCCTGAGTTATCTTATTCACTGGTACCGAGTACTGCTTT
AGAATTTGTGGTGAGATTAATGTCATTTTATGTCGCAAGAATGCCTGGCAAGTCTTGGCT
GACGTTGGGAAGAATCCTGCAGCTATTCTCTCAAAACGCTTCCCGTGTTCAGGGGGAATA
GCATACCAAGTTTTTGGTTCACCAAAATGCAAGTAATTTATTGAGTAAAGATCCATGTCT
TCAGTATGCCATGCGAATGTAGTTTTCCACATGCCAAAATACAGGTATGCTGTATTCACG
CCATCAATTTCGATACCGTAGTCAGAGTTGACAAAGTCTAAAATTGTCCCTAAGCTATTA
ATGTTCCATTCTGTGACGTCTGGATCTGTGATGCTGCCATTTACATCGGCACCATAAATA
GGGGCTACATAAGTCACATTTTTCCAGTACTTCCTCTCCAGGTCGTCAAAGCTGGAGTGA
CGAGGGGTGCAGTACTTGGCTGAGTTAGCCATCACCGCGAATTGTTTCACAGTCATAGAT
TTCTTCTGAATATTAATTTGTTGGAACAAACCTTGTTTACCGGTGACCACTTGACATATA
GGCGCCGGTATCGTCACATTGAGCGCATCCAAGTCGTAGCCAGACCTTCGTGGGACCCAT
TCCGGTGGTGGGATGACCTTG
(2781 bp)

- SilkBase 1999-2023 -