SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp9945_c0_seq1
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		acinus_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0002230 P positive regulation of defense response to virus by host
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0006921 P cellular component disassembly involved in execution phase of apoptosis
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0016887 F ATP hydrolysis activity
GO:0019899 F enzyme binding
GO:0030218 P erythrocyte differentiation
GO:0030263 P apoptotic chromosome condensation
GO:0035145 C exon-exon junction complex
GO:0043065 P positive regulation of apoptotic process
GO:0044822 F RNA binding
GO:0045657 P positive regulation of monocyte differentiation
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0061574 C ASAP complex
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
Transcript
Level		FPKM:1.32 TPM:1.44
ORF EntryO_BomoFB11018_complete:A_BomoFB_comp9945_c0_seq1
Sequence
(Nucleotide)
GTTTGAAAAGTATTTATTCAACATACAGTGACTGGAATATATAATTGGACAGAACAGAAT
TTATATGACAGAAGGATCTAACACATTTTCACATAGCTGCGTGATTCGTAGGAAACATTC
AACGTCTTCCGATTAAACCATGACGATCAGCGTTCCACCAAGTGAGCAGCTTTCTAGACT
AATCATTAGACAGACATCAAACATGCCTCCTGTATTCTTTTGTTTCTCTGGAAATATACT
GTAAACGGCGCCCTCGTTTAACTAGTTCACGATAGACTTATTGACTTGAGCATTTTTAAT
TACGGCTCCATTCTCGTCACATTTATCGCTCGCACATTTATCGCCGGTCATAAAATTCCA
GCAAGTCAGTTCAACTTTGCTTAGCAACAACTAATCGACAACGTCCCAAGACGTCTACAA
GTATCGCCAATATCTCGTTGTGACAATCATCAAGTCAGCGTAGGACCCGCGCACATCCTC
AGAGCCGAGCTTCATATCCCCCGGCATCGTGTTAGTGACCGCGGTACTCCGACGAATTAA
ATCATAGCTTTCCCTCCAAGCTTGCCTTTCTATAACATTGTGTATAAAATAAATTCAGAC
GATGACTGATATCTTTTTTTTACAATTTAAAATCCATTCGAGTTTCCTGTGCACTTGAAC
CTAATTCATATGCTATTATTAGTTAACACAGTAATTAAAAAAGTACTTCTTAAGAAAATG
CTACCTGAAAGAAAAATGTCGAAGATCGACAGTTATATTAGATGAGTATGAGCTTGTGAA
GTGTCACTGTGTTTTAATATGAAATGTGTGAGTGTTATGTTTGATAAGTGGTGTGATTAT
GTAAATGTTCAATGAATGTATGCAGGACGGACCATGCTAATGACGTCGGTGGGGCGGCGG
CCGACGTTGCTCTAGTAAGCGACGTTCATACTCGGCCATGTGCTGGCGACGTTGCTCTTC
CTTTATTGCAATCGTTTCAGCAGACAGTGGCAACCAGTAAATACATGGAGTTGTTTTTGT
TTTTCTAAATAAATCATCAAGTAATTTTGCAGGAGCCTCTTCTTCTTTCTTTTTGAATTT
TCTCGCTGGTTCGGGGCTCCTTTCTGGGGTCCGATGTCGTCTTTTCTCAGATGGACGCTC
TTCACGTCGCAACTTGTCTCTCTCTTTGTCTTTATCATTTTTGCCTACATCCCACTCCCT
CATAGTTCCTTTACGCTCCCATGACTTTTCCACTTCTGCCTCTCTTTTCAGATCTTGCTC
CCGAAGCCAATCCTCAACTGTTCCTGGAATTGCCGAAGGTGGAGCACTCTCTGCTTCCTC
ACTGGATAATGCTTTGTCAAATGCTTCTGTTGTTGAAAAGTCCACATGTAAAGTCTTTGG
ATTTGATACAGGCCATGTCACCCCATGCAAGGCATGTCTTGTTTCAACAGCTTGATCTTC
AGTTTCATATTTCACATAGCATTTAGATTTTATTTTATCTATCCAAAACCCATTTTCCTC
TATCCTGCCAGTTCTTTGCAGTAAGTTTTTGAGTTGCAATAGTGTAAATGGCCTGACTAA
ATTGGTGATAAAGAGTATATTTGACTGTTTGTGCCTTGGTGGACTGGGCGGTCTTGCAAT
TATACTGTCTTTTTCTTTGATAATCGATATTTTTCTATTGGAGTTAATTTCCTTTAGTTT
AACGTTTTCTTTGTCTTTGTCATTCTCTTTTCTTTCATCTTTTTTCTTTTGTTCAACATT
TTCTGAATTATCTATAACAATTTTGGGCAAGACAGGCCGATCAATTTTCTCTTTAACTTC
TATTCTTTTATGTTTCTTCTCTTCAATAACTTCATCAAATTCAACAGGTTTAACATTTGG
TATGATATCCTTCAACACATCAGTTGATATAGTGATTGACTTCTGTGTTGTTAGTTTACT
TGGTCTAGATCCCCATTTTCTTTTCCTATTTACAACAATTGGAACAATTTGACCATTTGG
TACAATTTCACTTTGAGATGTTGTTGTTTCATCTGACTGTCCTAGATCTTTCCTATTGCT
GCTATTATTGTTTGATGAATATTTCCCATTATTGCATTTGGTCACTTCATTGCTTTGTCC
AGAATCTGTTGAAGTTTTTCTGGATTTCTCTACAACATCAGATTCATTAATAACTTTTGC
ATTTCCAGTGTTTGTCTCTGGTTCATTGCTGTCTGTTTGTCCCTTTTTAATACTTACCTC
AGCATTATGATCCACAGTTACTTCTAATTCCTCACTGGTTTCAATATCCTTTGATTTACT
TATCTCCACATCTTGTATTTCCATTTTTGATTCTTCTGGATGTAATTCTAATACCTCTGA
TTTATCAACAGAATCACTTCTTTCCCTGCTGGTTGACTTATTGTCATTGGATTCAGTTTC
ATTTATCTCTGTTTGAGATGTGTCTTTGGTAGTTACAACAGTTGTTTCCTCCTTTTCAAT
TAAAACAGTTTCATCCTTTAAGGTATCTAATGTTGATTCATTATTTTCAGTAACAGACTC
AGCATTTGTTGTTTCAACAGTTTTGTCTTCATTTGTTATCTCTGTTTTTTCATCATTTAT
GGATTCATCAGTATTTTCATTGTTTACTTCAGTTGTTTCAGCGGCCGCAGCTGATACTGA
GTCAAGTTTGAGTGAAGCATTTGTTTCAGGTCTGGGTGATCCAACAGTTGTATCAGCAAC
AGGATCGTCCTGTACAGAAGCACAAATTTCTACGACATTACTAGATTTTATACTGCTTGA
AGCATCTTCGGATGATTCTTCAATTGATTTATTTTCTTTATTTGTTGTAGACACAGAAGT
CTCTACTTTGGCCTCTGTTTCACTTTGAGATACTTCATGATCACTTTTCTCTTTATCTTC
ATTTTCAGCGTCTTGGTCTTCTTCTTGGCTGTCTTGATTTTTGTCAGTGCCATCTTTATC
TCGAAAAGATCTTTTAGAACGGTGTTTATTTTTTTTCTTTTCTTCCGATGTATCACTAGG
GTTATCACTAGAACTAGTAGCTCGCGAGTGTTTCCTTTTTTGACGCGGCGATCTTTCAGC
ACGTTCTGGTGTAGATGGCGGACGTGTTAAGCAAATTTTGAGTTTTTGTATTTCTCCACC
ATCACCTGATCCCTCAGCAGTTTTAACCTGCCAAACTTGATCCGGAGACTCGTCCACATT
TTCCCCTTTGGCGGGAGTTTGTGGTGGTTTACGTTCCTCTTCCGCCACGGGTACAGCTAC
ACGCACTGGACTTGCTTCATCTGGAGAATCATTTTCTGATGAAGAAGATTGTTTTCTACG
TCGCGTTCTTGTTTTCTTTGCTTTTTCAACTTTTACTTCAGGAGAGGCCTTTGCCTTCTT
ACTGGCGGTACGCTCACTTTTCCGACGCATCCTCACCTAAAATAATAAGTACATTTATGT
ACACGGATTTATGTCATGAGGATTTTACATAATATTGTGGTATTACATACGCTTTCGTCT
ACAAAATTCACTGTTTACAATAGCACGAATTCACAATAACACATAAAGAGCACACGACAA
TTTACAAGAAACCCACCATTTTGAAAAAGTA
(3571 bp)

- SilkBase 1999-2023 -