SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp9826_c0_seq1
Scaffold_idBomo_Chr10
NCBI non-redundant
(nr)		PREDICTED:_pre-rRNA_processing_protein_FTSJ3_[Papilio_polytes]
Ontology
GO:0000453 P enzyme-directed rRNA 2'-O-methylation
GO:0000463 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 P maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0001510 P RNA methylation
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0008168 F methyltransferase activity
GO:0008649 F rRNA methyltransferase activity
GO:0008650 F rRNA (uridine-2'-O-)-methyltransferase activity
GO:0016435 F rRNA (guanine) methyltransferase activity
GO:0016740 F transferase activity
GO:0030687 C preribosome, large subunit precursor
GO:0030688 C preribosome, small subunit precursor
GO:0031167 P rRNA methylation
GO:0032259 P methylation
GO:0042254 P ribosome biogenesis
Transcript
Level		FPKM:0.28 TPM:0.31
ORF EntryO_BomoFB10623_3prime_partial:A_BomoFB_comp9826_c0_seq1
Sequence
(Nucleotide)
CCCGGACCTCACTTGTACACACACTCGTAATGTGCATATTGCATTCAATTTTGTCATGTA
ATTGATTATAATCAATTGTTTTTAGAAATAACCCCAGAAGTCATATGCTTAAAAAAGTAA
CATACTACAATGGGAAAGAAAACAAAAGTAGGAAAACAACGGAAAGATAAATACTACCAA
CTAGCTAAAGAAACAGGATATAGATCAAGAGCTGCATTCAAATTAATACAATTGAACAGG
AAATTTGGATTTTTGCAGAAATCACGAGTATGTATCGATTTATGTGCTGCACCTGGTGGG
TGGATGCAGGTGGCCCACCAAAATATGCCAGTCTCGAGCATAGTAATAGGAGTCGATTTG
TTTCCAATAAAACCAGTTCCAGGTTGTATAGGTCTGACTGAAGATATCACTACAGAAAAA
TGTAAGGCAGCAATCAAAAAAGAAATAAAAACATGGAAAGCTGATGTGGTACTTAATGAC
GGTGCACCCAATGTCGGTCTTAATTGGATCCATGATGCCTATCAACAAGCTTGTCTAACG
TTGAGTGCTTTAAAACTTGCAACGAACTTCCTCAGAGAAGGTGGTTGGTTTGTGACTAAA
GTATTCAGATCGAAAGACTATCATGCACTTTTATGGGTTCTGAAACAATTCTTCAAAAAA
GTACATGCTACAAAGCCCCAAGCTTCTCGTAATGAGTCTTCTGAAATTTTCGTTGTATGT
CAGGGCTATATTGCACCAGATACAATTGATCCTAAATTTCTCGACCCCAAACATGTCTTT
GAAGATCTTGATATAGTTAAAAAACAGCATATAAATATATTACATCCTGAGAAACAAAAA
AAAGCAAAAGCAGAAGGATATAAAGAAAATGATTATACCACACATCATAAAGTAAAACTG
TCTGATTTTTTGGGAAAAGATGATCCAGTAGATCTACTTCATGGTTGCTCTGAGATTGTT
TTCGATGATAAGGAAATAGAAACTCATCCAAAGACAACACCAGAAATAAAGGAATGTTGT
AAGGATATTAAGGTGCTTGGACGAAAAGACTTAAAATCACTGCTGTCATGGTTCAAGCAA
ACGAAAAGACTTAAAATCACTGCTGTCATGGTTCAAGCAA
(1120 bp)

- SilkBase 1999-2023 -