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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp9802_c0_seq2
Scaffold_idBomo_Scaf034
NCBI non-redundant
(nr)		PREDICTED:_PAB-dependent_poly(A)-specific_ribonuclease_subunit_PAN3_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0004672 F protein kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0031251 C PAN complex
GO:0044822 F RNA binding
Transcript
Level		FPKM:2.70 TPM:2.96
ORF EntryO_BomoFB10490_complete:A_BomoFB_comp9802_c0_seq2
Sequence
(Nucleotide)
ATGCAATTTTGTTGTGGTTTTGTATTAAAATTGCTGCCCCAGTGTTTTGTGTGAATGAAT
CAATAAAGATTGCCTTTAAGCCCCGTCTTTTGAGACAATGAAATACGTAGTTTTTAGATT
TTTGAGGGTTTGATTTCTATCACGTATTTAATATAGTATTCTAGCTTTCCAAATATGTCT
GGTTGAAATTGAACCCTTAATAACGACATGTTGGGGTACTCTCATTGTCATGAATAACTG
TGAATCGAAAAGAATCATAAATTAAGCAGACTGCACAGACGCACTGCAGTTTTGAAATTA
TGGATCCATCAATATTTCTACCATACGCACCGCCTAACGGGCTTCCACAAGAATCGAAGC
TAGTTACATACATGAGTCGCTCAACTTCGACGCCCACACGCTCTCTTAACCATGCTATAG
GGAAGCTCACTTTGGATTCCTCACCACCAGGTGTTAAGAAGGTATTGGTGAGCGAATTTA
TTCCGATGAACTACTATGTTCCGCCACCGAATATGCTTCCCCCAGAATCACCTGAGGGTC
CACCACCACCTCCTATACCAATGGCGAATGCTTCAACTGTCCATCAGGAGAACGTGGGAG
GAACTACCTATTTCTACTCGACCAATTCAGACAGCCTCAATACCACTAGCGGTCTTAATT
CATCGGCTTCCATGGATTTCCACCAACCAGGTCCGTCTGAGCCATGTCTAAACGCAGTAG
GGCCGCCGATGGTGTCTCCGTATGCTTCGCAGATGTACGCTGGGGCCTTACCGCAGCCAG
GGCCGTCCACCAACAAACAAGGTCTAGCGGCGACTTTTTACAATCCCGAAACAATACGGT
CTGAGATCTACGACAGGAATGATGATGTTTATTTGCAGCCTGATCTCAATCAGTTTCCAG
ATATACCGGACAGCGTGGACATGTACGCCGAGCTGGTACCCCTGGAGGGTGCCGTGACGC
ATTCGATGTCGACATCGTACCGCGCTACTAACCGTCAGAACGGTGATTATGTGGCTCTAA
GGAGGCTCCATTCTTACACGTCGCCGGCCTCCAAGCGTCTTGAAATGTGGAAGCAGATCG
ACCACCCGAACATTGTGCGTCTGGAAGAATATTTCAGCACCAAGGCTTTTAACGATATAT
CACTGGTCCTGGTGTACCAGTATCATCCAGCCGCTGTGACTCTGATGAACAAGTATTTGT
CCGGAAACGGAAACAACTCCGCCGAGGGTGGAGCTGCTTATCATGATCCGTTCTCTTCGG
ACCCGGATGCACCGCGTCCGTATACCCATCAGAAAAATGCCATGCTCCGTGCGGTCGCAT
GCGGTGCTTTGCTTCCGGAAGCTGTGTTGTGGAGTCTGCTCGTGCAACTGACGGCCGGCT
TGCGCGCCATACATACAGCCGGACTCGCCTGCAGGAGCCTGGAGCCGACCAAGGTGATCA
TGAACGGATGTCGAGTCCGAATTGCATGGTGCGGTGCTGCTGATGCTCTACACAGCAACA
CCAATGATGTAGTACAGGCTCAGCAAGACGATCTGACCGCTTTGGGCCGGCTGGCACTGG
CTCTAGCCTGTCGCACCATACATTGCGACAACCTCGCAGCGTCCATGGAACTCGTCGCTA
GGACCTACTCTGCGGATCTGAAGAACCTAATTCTGTATCTGCTGTCATCCTCGCCTGCGC
GTCGTTCCGTTATCGACCTTATGCCTATGATCGGAGCTAGGTTCTATACTCAGGTGGAGG
CACTGGAGAGACGCGCTGATGCGTTTGAAGATCAGCTGTCCCAGGAGATAGATAACGGTC
GTCTCCTCCGCATATTAATCAAGCTTGGCATTGTCAACGAGCGTCCAGAATTGAATCTGG
ATCCTGCTTGGTCGGAGACCGGAGATCGCTACATGCTGAAGCTGTTCCGTGATTATCTGT
TCCATTCAGTGACGACTGACGGCCGTCCTTGGCTGGACCAAGCGCACCTAACGCACTGCC
TGAACCAGCTCGACGGAGGAACTGCTGCGAAGGTGGAGCTGATGTCTCGCGACGAGCAAA
GCGTCCTGGTCGTGTCCTACGCTGAGCTGAAGCACTGCCTCGACCAAGCCTTCGAGGAGG
TGATGCAAGCCTCCGAGCCCGATTCCTAGCTAGCACTGAACGCTGGGCCTATGTCTGTGC
CCGAGCCAGAGCCCGAGCCGGAATACGGCTCCGGCTACACCAATAGCATACCCATCAGGC
ACGGCGACGACCTGGGCTACGTGACCAACGCGTACGGCTTCAGCTTTAGTTTCGGTTATA
TCAACGGGTTCAGCAGGGAGAACAACGTTCCAATAAACAATCAGTTTAATGAGCGCGACA
ACAACGGCGACGGCGGTAATGGCGACAACGGCGAATACTTCTTTGGCGGCCCAGGTAATG
GCAACCGCTGCAGTTGCGGCCACGATTACGAATACATGGAGTAGTTCGCTAAAAAAACGT
GACATTCTCGACTATATGTATTCATTCATATCCGTATATATATAATAATCAATTCAATGT
TTGTTAGTCAGGTTGATGTATTACCACGTATTCGTATTCGGATTGTGTACCAGTAAATGT
GCTGCGAGCACTGTTTACGTACTTAGGAAACATCGTCCCGATCAGGACTTGTACTTACGG
ACATTTGATTCTATGTTTGTCCAAGATAAGATTGAATTGGATTGCATCGTACTGGGCTAT
GTCCCTGTACGGGGTTCATTAGGAACCTTTTTCTCGAACAGAGGTTTTTTTTAAATCTTA
TAATAATAAACATATATTAATCACACTGAAGATTTCAGATAGTTATTATAAACAAGTTTA
ATCATTATATACTCCCTTTTGTGTGAACGCATTTTTATTCGTAGTATTTTTGTAGTAGTA
CACATGTATGTTCTACACGTAATATACAGGATGTAATAGGACTTCCGGTGTCAATACACT
ACACCACATCTCGTTATTCGAAAACAGAATTAGGAATATAACCCGAAGGTTATATAGATT
CAGTATTTCGTGATCCCGCAATGAATGCGTACAAAATTCGGGGTCAACAACCGCACCCAG
TATGCAACAAGCGATGGAACCTCGTCCAAGTCTCTTTCGCGGCGTCAGCCAATCACTTAT
TGTGTTATGTACGATCAGCAGTAGAATTGCATGGGATAAATAATTTATTATATATTATAT
AAAGATGATTTTATATAAATAATATATTAAATATAAAGACAATTATTGTCTTTAATTTCG
AGATCTTGTTCTATTACATCCTGCATATCATAACAGCGATGCGTCGGAGT
(3290 bp)

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