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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp9775_c0_seq5
Scaffold_idBomo_Chr10
NCBI non-redundant
(nr)		PREDICTED:_splicing_factor_3B_subunit_1_[Amyelois_transitella]
Ontology
GO:0000245 P spliceosomal complex assembly
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0034693 C U11/U12 snRNP
GO:0044822 F RNA binding
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:1.97 TPM:2.15
ORF EntryO_BomoFB10389_complete:A_BomoFB_comp9775_c0_seq5
Sequence
(Nucleotide)
ATTAAATAAGAACAATATCTTTGCATTATCATTTATTTTTCAGTAAACCCAGAAGTGTTT
CTTAATTATAACTATCTTAATATAATGTTTTAAAGCAGATAATCTAATTCGTATCTAATG
AAGTGATTATTTGGGTCATTTTGTATTCTGGGATATCCTGCAACAAGTGCGTCCTGTCCT
CCGATGTAAAGCGTATTGTAAATTTTCCAATAAACGTCGCGTACTTTCCTCGCTGGATGG
AACAGGCCCTGTAATGCATATTGAAGTATTTTAATGGGACCTAGGGCAACTCGCATGCCC
TCAACAGCGTCCATGAAGGCTTGCACCAGATGCGGTGATGTCTCAAAAATATTTGGCCAA
ACATGATTTAATAGATGTACTAAGGCATCTTCACAGCCGAAACCATACACGCCGAGCGAC
ATATGTTTTATGGCAGCGCAAGCCGTTTGTCTGTGTACTAAATCTCGATCCATAAGCGCG
TCTTCCAATAATGGGCAAACTGCATAAATGTAATCCTTGCCCATTTCTCCAATGTACTCG
AAAAGGAAAGATAGTGATTTGAGCACACCGTTTTGAACATTTAATTCCGGTACTCTGTAT
TCATTCATTAAAGCAGGTAGCACTGTGAAAGGTGAACAGGTCTCTGCAACTATAGCAATA
GCGACCGTTGTGCACACTCTGTTCTGTCTCTCTTGCACTTTCAGATTGTTAAGTAAGGTT
GCGAGTACGTCATGAGGACCGATGGCTTTAGCAATATAACCAAAGGTATTTACAGTCGCT
CGTCTAATTGCCTTCTTATGAGCCTTTAATAGTTCAAGCAATTCAAAACATATTCTCATC
CATTCTCTGGCCGACACAAATTCCGGTCCTCTGTCTGCAATACGACCCACTAAATCAATA
CAATTCTCTTGTACTTTTTCATGCCTGTTTTTCAAAATGGGTGTAAGCCTAGGCAGGAGA
TCCTTTATTGGTGGGGTCATCTTTGTCATTCCAATAACATTGACAATTGCTTTTAATGCA
CCAAGTATAGAGCCTAGCACTTCAGGATATTCCTCTCCCAAGTACTCATACAGTACAACA
CCAAGATGCCCCATTAACTTTTCCTCCTGACAAGTTTTCATCACGACAGCGATCCGAGAA
ATGAGATCGGCAGCTTGTTGCCGAACTTTAGCAGACTTGTTGTTCATACGCCAAAGAATA
ATACCACATATCTGTGGTAAATAGGGCTTTACGCGTTTTCCCAATTGATTCACGATTGTT
CCAAAACCGTTCAGCATCACAACATCCTCAGTTGTCTGTTCTTGGAATGCATACAATATT
CCATCGATAAGAGCTTCTTCGAGCTTAGAATCAATGTCTGCTGCTCCTAAATTAGCGAGA
ATCTTTTCAATGGACTCCATCACCATTTTTCTATACTGCTCATTGTCGTCTTTTAGATCA
TCAACAATTCTGTTGATAATTTCTGATGCACCGACCTTGTTTGCAATTTCCACTGTGGTG
TCGACAAGCTGGCGATAGTTTCGTCTGTCGAGGGCCATACGATGGTTCCAGAAGTGTTTA
AAGAAATGAGGCAATATTTCATCCATTATGTATTGAGGCTCAACACCGTCGGTACCGCAA
CATTGTTTTACTACTTTTAAGACGATTTTTTTCATTTCTTCATCGGGCGACTGGAACTCA
CGAATAAGAATTAGCATCACTTCTCGTGTGTAGTAATTCGCGTATTCTGCATCCATGAGA
GGGATGAGGTATCCGATGGCTTTCAGGAATGCAGCCAGACCTTTACCACGATGCGTACGA
ATACCTTTCCACAGAGGTTTGAGCACGGAATCGAAGGACTCGATACCGTAGGGCGTGGCG
GCCTCGGCCAGAGCCGCGCTCGCCAGCGCCGTGATCGTTCGGACCTTCTGTTGTTCGTCC
ACCAGACCATGTTCAATAATTTCAACAAGAGATTTCAAATGTGGCAGAATAGCACAGCCC
ATCAGAATAGCAATTTGTTGCACAATCTTTATTCCTGTGTGACGTGCTTGCCAGGATTTC
TTAGATCTGCACACAGCTTTTAAAAATGGCAATAAAGATGGAATACCCAAGGCCGATGCC
ACTACCGCAAACGCTCGAGCGGTTGTGTTTCGTACATACTCATCTATGTTGTCTATATCA
GGCCTCATTGTAGAAATCATAGTAGCCAAGCCGGCTGCTTTAGCTAAATTTGAAATGATC
TCGCGACCTTCGACACGCGCATAATAATCTTCATCAATAAGCAGAGGTTCAATGACGACA
AGAATCTTATGTACGTAGGGTCGAACCAAGTCGTCTAATTTATACAAAATCCTGTCTATG
ACTTTGACCAGTAGATGTCTCTCTTGATCTTCCAGCGTAGGACTCATCAGTAATGGCAGA
ATTTGATTGAAAAGTGGTCCAGCACCGAATTCGCGAGCTTTATCTGTTATTTGTCGTAAG
GCAGCTTTGCACATGGGTGGCGTACCGTTCTTTATTTTCAAAAGAAGCTTCATTATTTTC
CGTTCCTTAAGTTCGTCGGGAGAGAGTGTATCCTCGTCGACGTCGATGAGAAGTTTGTCG
AAGTACTGGGCGTCCTCGGGCTTCATAAAGGGCAGCTGCTGGTTACCCTTGGGCTGAGGG
TCGAGAAGACGCGCGGCCGCCGCGGCCGAGCCGCCCGGCTCCTCCGTCTGCATGAAAAAC
CCGATTGGAGTACCACCCAACGGCGTGGGCGTCGCCGTCAGCTTGCGGGCCGGCGTCCGA
ATCGGGACGTACCCTGGGCAACAATACTTGCTATTAGGTTTTATTTTAAATTTACAATCG
TAGATAGGCAGACGAGCTCAGGGCCCAGCTAATGTTAAGCGGTGACCGGAGCTTATATGC
ACCACAGTGTGAATGCCGCCGCCCATCTTGAGACATG
(2917 bp)

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