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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp9712_c0_seq3
Scaffold_idBomo_Chr25
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_39_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000243 C commitment complex
GO:0000395 P mRNA 5'-splice site recognition
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:5.34 TPM:5.86
ORF EntryO_BomoFB10125_complete:A_BomoFB_comp9712_c0_seq3
Sequence
(Nucleotide)
CGTCGTCGAGCGCGGCGCGGGCGGCGGCGGGCTGGCGGCGCACGTGCTGCAGGAACCGCG
CGTACTTGATGGCGAGCGCAGACGCCAGCGACTTGTTCTTCGAAGTGCTGATGTACGTTT
CGTATAGCTGAGAGCACTTCTCGTAGTCGCCGCGTCGTCGCTCGAGGTTCACTCGCCTGT
ACTGTATTTGTACGAGATTGGGACAGGTTTTCTCTATACGATCAAGTATCTCGGCAGCTT
TCAGTGTATTGCCCTGCACCTCTTCGAAGTGTGCCCAGTGTAGGTGGAGCTCTGGCTTGT
CGAGGTGATGCACTGTGCAGGCTCGCTCTAGTACTTCCCGTTCTATTGCTATCACTTCAG
GATCTTGTTCAGCACGTTCTTCCAGAAACTTTATAAGCTTCATCCAGAATTCTTCATATA
AGGCACATGCAATGAGGCATCTCTCGTGGAGCACGAGGGCTCGCTTGAACGAACCGTGGT
GCTTCTCCCATTCGAGGTACGCCTTCCAGTTCTTTAGCTGGCAACGTTCCAGGGGCTTCA
CGTGGAAATAAGGCCGCTTGATTCCTTCTTCGAAAGTCCACCTCGCAGTTACTTCTTCGC
CGGTCGTTTTATGAATTTTTCTTCGAGCTGCAACAATCCGTTCCTTGATGGCTTGCGCCT
CTTCATCGGATGCGACATGGTCGACGGGCTCGTCCTCCCCGGGCGGCAGGTCGAGGCTGG
GCTGCGCGCCGGCCGCGTCCCGCACCTCGCCCCGCAGCCGCACCAGCTCCGCGTGGCTCA
CCACGCCGGTCACCGGCTCCGACATCACGTGCTCCTGGAAATTGTCGAAGTGTGACGTGT
ACCCTAAGGTGGGTGTTGCCAAAAGACGATCGTAGATATTCGTGACATTGAGAGCGGAAC
CATTTTCCGCTTCCCATTTGATGTAAGACTCCCAAAGACGATCCGAGCGAAATTCTAGTC
CGCATGCATCTATGGCTCGTTCATACTGAGATCTGATGTACGCATGGTCTTCGGTTTTAG
TCGCTTTTATATGATTGAGGTAATGTATCCAGAGGTCTACGGATAAAGGTATAGCTTTAA
GTCCCCTTTCCAAAACCTCTAAGCACTTCTTTTTACTTCCTTTACGTTTTTCATAATCTG
CAAACTTTCTCCAATATCCATAGCAATAAGGATAGTGGGATAAAAAGGCGTCATAGGCTT
CACGTGCAGCTTCAACATCGCTCTCTTGATCGACATATTGTAATAGGTAGGTCCACCCAG
TGAAGTCAGTCGGATCATCATTCACAACTTTCCAGTACTTTTCCAATTCCGGTAAAACTT
TCTTTTTAGGTTTTTCATCAACTGAAGGTCTCTTTTCGGCAGGTATGGGCTTGCTTTCGC
CGTTCTTGGTAATAGCTTGTTTTTTTGTGGAAGATTCACCTTCTGATGTTGGTGATCCTG
GATCATAATTACTTCTCTCTTCATCTGGTTTTCGTTTTCTAGACTCTTTCTTGGATGCAG
GTAGCTCATCTTCTGATACAACCTCTGTATCAGCAGGCAGTTCTGCAGGTTTCGGCCCCG
GCAACTCATCATCAGATACATTCTCAGCATCTTTGATGCTCGGCTTTTGCACTTCAGGAA
GTTCATCCTCTGATACTACTTCTGTTTCTTCAGCACCACCAATCTTACTTGCTGAGTCTT
GTGATTGTTCTTTGATATCATCTACTTCTCTTTGGTTTTTAAACTCTTTGCCTTCATCCT
GCTTAATCACTGGATCTTTTACTGGACTGCTACATGGCTCAACAATTTCCAATTGCTCTG
ATTTATCCACATTTAAATTTACATGCTCAGTGGCGAAGTTAGAGTCATTGCCAGAGTTTT
CATTTATCTCTCCTACATTGGAATCTGTTGCATGTTGACTTTCAGACTGCCTACTGTCTG
TGTCTAAAACTGCTTTGTGGGATGCAGAGTCACTTTGAATAGAATTATCTTCAGTCAATG
CGCTATTTAGAGAATCATTGGGAAAAGTTACAGCATTATCACCAATGTCAAAAGAATCTG
TACTGAAGCGAGGGCCGTTGTTTTCGAGGTAGTCACCAGCGCTTCCAGCTGATAATTCCA
CGGCGTTCAAGAAACATTGATTAGATGTCGACGACTCATCAACAGCAGCATCGACACTAT
TAAATTCGCCCTCTGTTAACAAATGAGAAAGTCCGTTGGAGTTCTCATTTATCAAAGGAC
CTTCGTCTGTATCCATGGGATTTTCAGATCCTTTCTGATTATCGGAGCTTGTTTCATCTT
CCATGTTTCAAGTTTAGAAATCTGGTAGAACGAGATATATCGATCAAACACTACAATCTA
AGCGAAACAGCTATAGTAGTAGTTTGAGTTGGAAAAGTATTTAGTCGCTACGTTTTATTT
CGTATTTGGACGCAATTTGCTTTAGTTTATCGCTTTTTGAGCTTTTAGCTTCTCTTTTGA
ACATAAG
(2467 bp)

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